gorule-0000001: invalid relations not reported correctly

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A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

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gorule-0000001: invalid relations not reported correctly #2161

Closed pgaudet closed 7 months ago

pgaudet commented 10 months ago

Hi @mugitty

This line is failing GORULE-000001

ERROR - Invalid Qualifier:Invalid Qualifiers: acts_upstream_of,_negative_effect--UniProtKB A1B2F4 aztD acts_upstream_of_or_within,_positive_effect GO:0004672 PMID:26468286 IDA F GORULE:0000061-15 protein taxon:318586 20230427 UniProt

The message is confusing: it mentions that "acts_upstream_of,_negative_effect" is invalid, but the line contains "acts_upstream_of_or_within,_positive_effect". Is this hard to fix?

pgaudet commented 9 months ago

pascale to check reports of the test GAFs

pgaudet commented 7 months ago

OK looks good on the current test ERROR - Invalid Qualifier:Invalid Qualifiers: acts upstream of--UniProtKB A1B2F4 aztD acts upstream of GO:0004672 PMID:26468286 IDA F GORULE_TEST:0000061-17 protein taxon:318586 20230427 GO_Central

0000061-17