gorule-0000001: GAF and GPAD parser checks for GO Id

geneontology / go-site

A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

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gorule-0000001: GAF and GPAD parser checks for GO Id #2175

Closed mugitty closed 8 months ago

mugitty commented 1 year ago

The following line is not reported as an error. Only as warning ! FAILS GORULE:0000001 - TEST 13 - bad GO ID syntax; bad namespace
PomBase SPAC25B8.19 ypf3 is_active_in RO:0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-13 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase

Update GAF and GPAD parser to ensure name space is 'GO' and identifier is integer > 0

pgaudet commented 8 months ago

Note that this test is checking the the GOID is correct: GO:####### GORULE:0000001 - TEST 13 has RO: as the prefix.

Not sure which rule is testing this, I had assumed gorule-0000001

pgaudet commented 8 months ago

This is now OK on the latest test.