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GORULE:0000008: GO check for do not annotate terms #2195

Closed ValWood closed 9 months ago

ValWood commented 9 months ago

When this is reported for MODs could it be restricted to the MOD annotations? tks,

WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC1002.03c gls2 involved_in GO:1904380 PMID:19605557 IDA P glucosidase II alpha subunit Gls2 protein taxon:4896 20210526 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC10F6.11c atg17 involved_in GO:0030242 PMID:21873635 IBA PANTHER:PTN001997259,SGD:S000004415 P autophagy associated protein kinase activator Atg17 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC12B10.06c emi5 involved_in GO:0018293 PMID:21873635 IBA PANTHER:PTN000279729,UniProtKB:Q9NX18 P succinate dehydrogenase complex assembly protein Emi5 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC1783.06c atg12 involved_in GO:0000422 PMID:21873635 IBA PANTHER:PTN000333039,SGD:S000000421 P autophagy associated ubiquitin-like protein modifier Atg12 apg12 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC19B12.10 sst2 involved_in GO:0035871 PMID:26412298 IDA P human AMSH/STAMBP protein homolog, ubiquitin specific-protease protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC19B12.10 sst2 involved_in GO:0070536 PMID:21873635 IBA PANTHER:PTN000310308,TAIR:locus:504955440 P human AMSH/STAMBP protein homolog, ubiquitin specific-protease protein taxon:4896 20230603 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC23A1.04c mnl1 involved_in GO:1904380 PMID:21873635 IBA MGI:MGI:2180139,PANTHER:PTN002271980,SGD:S000001247,UniProtKB:Q9BV94 P alpha mannosidase Mnl1 htm1 protein taxon:4896 20230407 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC24C9.02c cyt2 involved_in GO:0018063 PMID:21873635 IBA CGD:CAL0000175773,PANTHER:PTN000297201,SGD:S000000037,SGD:S000001570,UniProtKB:P53701 P cytochrome c1 heme lyase Cyt2 protein taxon:4896 20201024 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC27F1.02c cdc8 involved_in GO:1904530 PMID:17452625 IDA P tropomyosin fus4 protein taxon:4896 20170811 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC27F1.02c cdc8 enables GO:0098772 PMID:12796476 IDA F tropomyosin fus4 protein taxon:4896 20200317 PomBase has_input(PomBase:SPAC1F5.04c) WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC29A4.17c fun14 involved_in GO:0000422 PMID:21873635 IBA PANTHER:PTN000482219,UniProtKB:Q8IVP5,WB:WBGene00011528 P integral mitochondrial outer membrane (MOM) protein atg43 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC458.05 pik3 involved_in GO:0030242 PMID:21873635 IBA PANTHER:PTN000005955,SGD:S000004230 P phosphatidylinositol 3-kinase Pik3 vps34 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC458.06 atg1803 involved_in GO:0000422 PMID:21873635 IBA PANTHER:PTN000132136,SGD:S000006021 P autophagy associated WD repeat protein Atg18c atg18|atg18c protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC4C5.02c ryh1 enables GO:0098772 PMID:21035342 EXP F Rab family GTPase Ryh1 hos1|sat7 protein taxon:4896 20210129 PomBase has_input(PomBase:SPBC30D10.10c),part_of(GO:1904515) WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC589.07c atg1801 involved_in GO:0000422 PMID:21873635 IBA PANTHER:PTN000132136,SGD:S000006021 P autophagy associated WD repeat protein Atg18a atg18|atg18a protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC7D4.04 atg11 involved_in GO:0030242 PMID:21873635 IBA PANTHER:PTN000996416,SGD:S000006253 P autophagy associated protein kinase regulator Atg11 cvt9|taf1 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAC823.16c atg1802 involved_in GO:0000422 PMID:21873635 IBA PANTHER:PTN000132136,SGD:S000006021 P autophagy associated WD repeat protein Atg18b atg18|atg18b|mug179 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPAPYUG7.06 sdu1 involved_in GO:0016579 PMID:24313451 EXP P PPPDE peptidase family deubiquitinase/desumoylase Sdu1 hag1|mug67 protein taxon:4896 20170629 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC119.07 vps15 involved_in GO:0030242 PMID:21873635 IBA PANTHER:PTN000426471,SGD:S000000301 P serine/threonine protein kinase Vps15 ppk19 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC146.09c lsd1 enables GO:0008134 PMID:21873635 IBA MGI:MGI:1196256,PANTHER:PTN004187732,UniProtKB:O60341 F histone demethylase SWIRM1 saf110|swm1 protein taxon:4896 20211215 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC15D4.07c atg9 involved_in GO:0000422 PMID:21873635 IBA PANTHER:PTN000315580,SGD:S000002308 P autophagy associated phospholipid scramblase Atg9 apg9 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC1703.12 ubp9 involved_in GO:0035871 PMID:26412298 IDA P ubiquitin C-terminal hydrolase Ubp9 protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC1703.12 ubp9 involved_in GO:0071108 PMID:26412298 IDA P ubiquitin C-terminal hydrolase Ubp9 protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC1778.06c fim1 involved_in GO:1904530 PMID:20705466 IDA P fimbrin protein taxon:4896 20170630 PomBase has_input(PomBase:SPAC27F1.02c) WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC18H10.08c ubp4 involved_in GO:0035871 PMID:26412298 IDA P ubiquitin C-terminal hydrolase Ubp4 protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC18H10.08c ubp4 involved_in GO:0071108 PMID:26412298 IDA P ubiquitin C-terminal hydrolase Ubp4 protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC26H8.12 cyc3 involved_in GO:0018063 PMID:21873635 IBA CGD:CAL0000175773,PANTHER:PTN000297201,SGD:S000000037,SGD:S000001570,UniProtKB:P53701 P cytochrome c heme lyase Cyc3 protein taxon:4896 20201024 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC31E1.01c atg2 involved_in GO:0000422 PMID:21873635 IBA PANTHER:PTN000324023,SGD:S000005186 P autophagy associated intermembrane lipid transfer protein Atg2 SPBC660.18c|mug36 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC6B1.05c atg7 involved_in GO:0000422 PMID:21873635 IBA MGI:MGI:1921494,PANTHER:PTN000102341,SGD:S000001214,UniProtKB:A0A0G2KPR3,UniProtKB:O95352 P E1 Atg8 and Atg12 E1 activating enzyme Atg7 protein taxon:4896 20170228 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC713.02c ubp15 involved_in GO:0035871 PMID:26412298 IDA P ubiquitin C-terminal hydrolase Ubp15 ubp21|ubpD protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC713.02c ubp15 involved_in GO:0070536 PMID:26412298 IDA P ubiquitin C-terminal hydrolase Ubp15 ubp21|ubpD protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPBC800.03 clr3 enables GO:0008134 PMID:21873635 IBA PANTHER:PTN008735182,UniProtKB:Q9UBN7 F histone deacetylase (class II) Clr3 protein taxon:4896 20211218 GO_Central WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPCC188.08c ubp5 involved_in GO:0035871 PMID:26412298 IDA P ubiquitin C-terminal hydrolase Ubp5 protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPCC188.08c ubp5 involved_in GO:0070536 PMID:26412298 IDA P ubiquitin C-terminal hydrolase Ubp5 protein taxon:4896 20151022 PomBase WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPCC4B3.07 nro1 involved_in GO:0043388 PMID:22017871 IMP P negative regulator of Ofd1, Nro1 protein taxon:4896 20171130 PomBase has_input(PomBase:SPBC19C2.09),part_of(GO:2000640) WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPCC4B3.07 nro1 involved_in GO:0043388 PMID:22017871 IMP P negative regulator of Ofd1, Nro1 protein taxon:4896 20171130 PomBase has_input(PR:000028992),part_of(GO:2000640) WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPCC777.08c bit61 enables GO:0098772 PMID:21035342 EXP F Protor homolog, Bit61 protein taxon:4896 20210129 PomBase has_input(PomBase:SPBC30D10.10c),part_of(GO:0038203) WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to uninformatively high level terms -- PomBase SPCC825.02 gbs1 involved_in GO:1904380 PMID:19605557 IDA P glucosidase II beta subunit gls2beta protein taxon:4896 20210526 PomBase

pgaudet commented 9 months ago

@ValWood You are looking at the report by source. You should look at the reports by 'assigned by', only annotations assigned by pombase are shown: http://snapshot.geneontology.org/reports/assigned-by-pombase-report.html#gorule-0000008