geneontology / minerva

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Allow skipping ShEx in --validate-go-cams when --shex is omitted #422

Closed dustine32 closed 3 years ago

dustine32 commented 3 years ago

This came out of a request by @ukemi for OWL consistency checks to be run on the MGI import models. But since we're still working on a ShEx validator bug exposed in these models, my attempt to bypass --shex in --validate-go-cams (and thus only running OWL checks) didn't seem to be working. ShEx checks were still performed and eventually broke on a model due to aforementioned validator issue.

This PR is to allow validation w/o ShEx, which I know is not the desired attitude in the MOD imports project but this was necessary to get out the OWL checks. So, up to you @balhoff if you want to merge this "feature".