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geneontology / minerva

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GAF/GPAD example, neuron fate specification and downstream behaviors, 57ea2dae00000114 #62

Open vanaukenk opened 7 years ago

vanaukenk commented 7 years ago

This is the example, discussed in Hinxton, that illustrates the relationship between a transcription factor involved in neuron fate specification and the downstream behaviors that are affected when that transcription factor is not present and neuron not properly specified.

slide1

vanaukenk commented 7 years ago

WB currently has annotations between ttx-1 and two processes downstream of transcription, the neuron fate specification (currently fate differentiation, but I want to change that) and thermosensory behavior, but I don't think we'd get these annotations from Noctua based on the above representation of the model.

balhoff commented 7 years ago

Output from test build: https://build.berkeleybop.org/job/export-lego-to-gpad-sparql/lastSuccessfulBuild/artifact/legacy/gpad/57ea2dae00000114.gpad/*view*/

balhoff commented 7 years ago

@vanaukenk we're not getting any annotations in the test output for this model (missing evidence). Do you want to add evidences, and then see how it looks after the next run, or close this issue?

vanaukenk commented 3 years ago

Need to add evidence and check model structure to see if this ticket should remain open.