geneontology molecular_function_refactoring issues

geneontology / molecular_function_refactoring

A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch

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TF refactoring umbrella ticket

#50 dosumis closed 5 years ago
1
Infer involved_in Reg of BP_X from MF -R-> BP_X

#49 dosumis opened 7 years ago
4
Design pattern for compound MFs using NTPase as an energy source

#48 dosumis closed 5 years ago
3
New top level MF class: Protein tagging activity

#47 thomaspd closed 5 years ago
1
Specific molecular function regulator

#46 dosumis closed 5 years ago
2
Location of receptor != location of its functions?

#45 dosumis opened 7 years ago
5
Formal def for GEF activity

#44 dosumis closed 5 years ago
6
Make design pattern and template for ionotropic receptor activity

#43 dosumis opened 7 years ago
0
Make design pattern and template for nuclear receptor

#42 dosumis opened 7 years ago
4
Make design pattern and template for GPCR activity

#41 dosumis closed 5 years ago
2
Make design pattern and template for Ser/Thr Kinase receptor activity

#40 dosumis closed 5 years ago
1
Make design pattern and template for receptor tyrosine kinase

#39 dosumis opened 7 years ago
0
general classification of receptor activity

#38 dosumis closed 5 years ago
5
Refactor cell-communication / cell-cell signaling to move start point for signal transduction

#37 dosumis closed 7 years ago
1
structural molecule (activity)

#36 dosumis closed 5 years ago
1
small molecule interconversion

#35 dosumis closed 5 years ago
2
move and rename 'binding, bridging'

#34 dosumis closed 5 years ago
1
DNA structure modifier (activity)

#33 dosumis closed 5 years ago
2
molecular energy harvesting

#32 dosumis closed 5 years ago
2
molecular transducer

#31 dosumis closed 5 years ago
25
Intercellular signal

#30 dosumis closed 5 years ago
2
How to represent binding of a gene product in LEGO:

#29 dosumis closed 5 years ago
16
cell adhesion mediator

#28 dosumis closed 5 years ago
3
Decide on new upper level classification in MF

#27 dosumis closed 5 years ago
4
transporters

#26 dosumis closed 5 years ago
5
General pattern needed for compound functions

#25 dosumis closed 5 years ago
7
Proposal for recording MF specificity in GO

#24 dosumis closed 5 years ago
1
Patterns for axiomatisation of transcription factor activities

#23 dosumis closed 5 years ago
14
Axiomatise catalytic activities

#22 dosumis closed 5 years ago
11
**17. Create subclass under specific molecular activity regulator role: protein degradation regulator role

#21 dosumis closed 7 years ago
0
**16. Create subclass under specific molecular activity regulator role: RNA degradation regulator role

#20 dosumis closed 7 years ago
0
**15. Create subclass under specific molecular activity regulator role:

#19 dosumis closed 7 years ago
0
**14. Create subclass under specific molecular activity regulator role

#18 dosumis closed 7 years ago
0
**13. Create new class under molecular role: specific molecular activity regulator role**

#17 dosumis closed 7 years ago
0
**12. Create new class under molecular role: polysaccharide or LPS metabolism role

#16 dosumis closed 7 years ago
0
**11. Create new class under molecular role: small molecule metabolism role

#15 dosumis closed 7 years ago
0
*10. Create new class under molecular role: RNA structure modifier role

#14 dosumis closed 7 years ago
0
**9. Create new class under molecular role: protein biosynthesis or maturation factor role

#13 dosumis closed 7 years ago
0
**8. Create new class under molecular role: molecular carrier role.

#12 dosumis closed 7 years ago
0
7. Create new class under molecular role: intercellular signal role.

#11 dosumis closed 7 years ago
0
6. Create new class underneath molecular role: DNA structure modifier role.

#10 dosumis closed 7 years ago
1
5. Move eight classes underneath molecular role

#9 dosumis closed 7 years ago
0
MF refactoring umbrella ticket

#8 dosumis closed 7 years ago
0
Consider obsoleting molecular transducer activity

#7 dosumis closed 7 years ago
2
Define patterns for defining receptor activity as a compound function

#6 dosumis opened 8 years ago
9
TF activity term renaming - Paul T suggested scheme

#5 dosumis closed 5 years ago
7
5. Move eight classes underneath molecular role

#4 dosumis closed 8 years ago
0
3. Create new class underneath biochemical activity: transport mechanism

#3 dosumis closed 7 years ago
2
2. Move two classes underneath biochemical activity: a) binding, b) catalytic activity

#2 dosumis closed 7 years ago
0
1. Create two new classes underneath the root: a) molecular role, b) biochemical activity

#1 dosumis closed 7 years ago
0