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geneontology
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molecular_function_refactoring
A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch
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TF refactoring umbrella ticket
#50
dosumis
closed
5 years ago
1
Infer involved_in Reg of BP_X from MF -R-> BP_X
#49
dosumis
opened
7 years ago
4
Design pattern for compound MFs using NTPase as an energy source
#48
dosumis
closed
5 years ago
3
New top level MF class: Protein tagging activity
#47
thomaspd
closed
5 years ago
1
Specific molecular function regulator
#46
dosumis
closed
5 years ago
2
Location of receptor != location of its functions?
#45
dosumis
opened
7 years ago
5
Formal def for GEF activity
#44
dosumis
closed
5 years ago
6
Make design pattern and template for ionotropic receptor activity
#43
dosumis
opened
7 years ago
0
Make design pattern and template for nuclear receptor
#42
dosumis
opened
7 years ago
4
Make design pattern and template for GPCR activity
#41
dosumis
closed
5 years ago
2
Make design pattern and template for Ser/Thr Kinase receptor activity
#40
dosumis
closed
5 years ago
1
Make design pattern and template for receptor tyrosine kinase
#39
dosumis
opened
7 years ago
0
general classification of receptor activity
#38
dosumis
closed
5 years ago
5
Refactor cell-communication / cell-cell signaling to move start point for signal transduction
#37
dosumis
closed
7 years ago
1
structural molecule (activity)
#36
dosumis
closed
5 years ago
1
small molecule interconversion
#35
dosumis
closed
5 years ago
2
move and rename 'binding, bridging'
#34
dosumis
closed
5 years ago
1
DNA structure modifier (activity)
#33
dosumis
closed
5 years ago
2
molecular energy harvesting
#32
dosumis
closed
5 years ago
2
molecular transducer
#31
dosumis
closed
5 years ago
25
Intercellular signal
#30
dosumis
closed
5 years ago
2
How to represent binding of a gene product in LEGO:
#29
dosumis
closed
5 years ago
16
cell adhesion mediator
#28
dosumis
closed
5 years ago
3
Decide on new upper level classification in MF
#27
dosumis
closed
5 years ago
4
transporters
#26
dosumis
closed
5 years ago
5
General pattern needed for compound functions
#25
dosumis
closed
5 years ago
7
Proposal for recording MF specificity in GO
#24
dosumis
closed
5 years ago
1
Patterns for axiomatisation of transcription factor activities
#23
dosumis
closed
5 years ago
14
Axiomatise catalytic activities
#22
dosumis
closed
5 years ago
11
**17. Create subclass under specific molecular activity regulator role: protein degradation regulator role
#21
dosumis
closed
7 years ago
0
**16. Create subclass under specific molecular activity regulator role: RNA degradation regulator role
#20
dosumis
closed
7 years ago
0
**15. Create subclass under specific molecular activity regulator role:
#19
dosumis
closed
7 years ago
0
**14. Create subclass under specific molecular activity regulator role
#18
dosumis
closed
7 years ago
0
**13. Create new class under molecular role: specific molecular activity regulator role**
#17
dosumis
closed
7 years ago
0
**12. Create new class under molecular role: polysaccharide or LPS metabolism role
#16
dosumis
closed
7 years ago
0
**11. Create new class under molecular role: small molecule metabolism role
#15
dosumis
closed
7 years ago
0
*10. Create new class under molecular role: RNA structure modifier role
#14
dosumis
closed
7 years ago
0
**9. Create new class under molecular role: protein biosynthesis or maturation factor role
#13
dosumis
closed
7 years ago
0
**8. Create new class under molecular role: molecular carrier role.
#12
dosumis
closed
7 years ago
0
7. Create new class under molecular role: intercellular signal role.
#11
dosumis
closed
7 years ago
0
6. Create new class underneath molecular role: DNA structure modifier role.
#10
dosumis
closed
7 years ago
1
5. Move eight classes underneath molecular role
#9
dosumis
closed
7 years ago
0
MF refactoring umbrella ticket
#8
dosumis
closed
7 years ago
0
Consider obsoleting molecular transducer activity
#7
dosumis
closed
7 years ago
2
Define patterns for defining receptor activity as a compound function
#6
dosumis
opened
8 years ago
9
TF activity term renaming - Paul T suggested scheme
#5
dosumis
closed
5 years ago
7
5. Move eight classes underneath molecular role
#4
dosumis
closed
8 years ago
0
3. Create new class underneath biochemical activity: transport mechanism
#3
dosumis
closed
7 years ago
2
2. Move two classes underneath biochemical activity: a) binding, b) catalytic activity
#2
dosumis
closed
7 years ago
0
1. Create two new classes underneath the root: a) molecular role, b) biochemical activity
#1
dosumis
closed
7 years ago
0
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