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geneontology / neo

noctua entity ontology
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http://purl.obolibrary.org/obo/go/extensions/go-lego.owl is in manchester syntax #33

Closed JervenBolleman closed 2 years ago

JervenBolleman commented 5 years ago

http://purl.obolibrary.org/obo/go/extensions/go-lego.owl seems to break tools, links and my brain ;)

goodb commented 5 years ago

Hi @JervenBolleman . I had much the same feeling when I started with this project. It forced me to learn about catalogues in Protege ;). Could you elaborate slightly more specifically the circumstances leading to your neo-induced brain breakage?

We've had some ideas about improvements. Perhaps your use case could help push things over the activation threshold to make some progress on this in coordination with updates to the RDF endpoint.

JervenBolleman commented 5 years ago

Hi @goodb the breaking my brain is tongue in cheek. The more important part is that the purl.obolibrary.org/obo/ code base doesn't understand Manchester syntax. Giving a big red warning on my firefox browser. Saving the go-lego.owl file in an RDF syntax (probably RDF/XML) will allow the obolibrary website code to function.

cmungall commented 5 years ago

When you say obo library code base which one do you mean? The owl api works fine but we're should do an rdf serialization so jena rdflib etc can read it

On Tue, Oct 16, 2018, 00:04 JervenBolleman notifications@github.com wrote:

Hi @goodb https://github.com/goodb the breaking my brain is tongue in cheek. The more important part is that the obolibrary code base doesn't understand Manchester syntax. Giving a big red warning on my firefox browser. Saving the go-lego.owl file in an RDF syntax (probably XML) will allow the obolibrary code to function.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/geneontology/neo/issues/33#issuecomment-430124544, or mute the thread https://github.com/notifications/unsubscribe-auth/AADGOSrIjUQZOfrIWa4Xx3U2C5IaSHGDks5ulYTzgaJpZM4XZMXw .

JervenBolleman commented 5 years ago

@cmungall please visit the link in my bug report.

To be clear http://snapshot.geneontology.org/ontology/extensions/go-lego.owl doesn't understand manchester syntax and it means we can't read this online.

JervenBolleman commented 5 years ago

@cmungall @goodb is there anything I can do to help?

balhoff commented 2 years ago

This file has been in RDF-XML for a while now, so I'll close this.