NEO no longer seems to build

[kltm]

NEO now fails on:

12:05:04  gzip -dc mirror/c_elegans.PRJNA13758.current.gene_product_info.gpi.gz | ./gpi2obo.pl -s Cele -n wb > target/neo-wb.obo.tmp && mv target/neo-wb.obo.tmp target/neo-wb.obo
12:05:04  make: *** No rule to make target 'target/neo-gramene_oryza.obo', needed by 'all_obo'.  Stop.
[Pipeline] }
12:05:04  ERROR: script returned exit code 2

[kltm]

@vanaukenk Would you know where the issue that's being blocked by this is?

[kltm]

Also tagging @goodb

[kltm]

Natch, likely long tail complications from: https://github.com/geneontology/go-site/commit/4614b3aecf01950dd43a5a1d2ac46853086a37d3

Can duplicate locally with:

sjcarbon@moiraine:~/local/src/git/neo[master]$:) PATH=/home/sjcarbon/local/src/git/owltools/OWLTools-Runner/bin:$PATH make target/neo-gramene_oryza.obo
touch trigger
wget http://s3.amazonaws.com/go-public/metadata/datasets.json -O datasets.json && touch datasets.json
--2020-02-11 16:20:44--  http://s3.amazonaws.com/go-public/metadata/datasets.json
Resolving s3.amazonaws.com (s3.amazonaws.com)... 52.216.170.61
Connecting to s3.amazonaws.com (s3.amazonaws.com)|52.216.170.61|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 82498 (81K) [application/json]
Saving to: ‘datasets.json’

datasets.json       100%[===================>]  80.56K  --.-KB/s    in 0.1s    

2020-02-11 16:20:45 (624 KB/s) - ‘datasets.json’ saved [82498/82498]

./build-neo-makefile.py -i datasets.json > Makefile-gafs.tmp && mv Makefile-gafs.tmp Makefile-gafs
make: *** No rule to make target 'target/neo-gramene_oryza.obo'.  Stop.

[kltm]

@vanaukenk This will complete quite late tonight, so we'll move to test tomorrow. I'd note that quite a few things are different in the metadata, fewer resources as well.

[goodb]

I think I'm saying the same thing, but http://geneontology.org/gene-associations/submission/gene_association.gramene_oryza.gz is a 404 and is requested via wget on line 258 of https://github.com/geneontology/neo/blob/763ca74511af8ffbf8242c6c3b0e597ed9e185b6/Makefile-gafs

[kltm]

@vanaukenk This has been deployed, with an interesting bump upwards in entities.

[kltm]

Now try for https://github.com/geneontology/go-site/issues/1221