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geneontology / neo

noctua entity ontology
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Need to check RGD identifiers in neo #52

Closed vanaukenk closed 4 years ago

vanaukenk commented 4 years ago

In the Makefile, it looks like rgd is included in the list of sources for annotatable entity identifiers.

However, not all identifiers in the RGD GAF seem to be available for annotation in Noctua.

For example, RGD:1309181 has eight annotations in the current RGD GAF, but isn't in the autocomplete menu as an option. The eight annotations are seven IEAs and one ISO.

Do all entries for a group's GAF get included in NEO or is there some filtering step somewhere that excludes some?

Note that RGD does not submit gpad/gpi yet according to the rgd.yaml file.

@krchristie

krchristie commented 4 years ago

@vanaukenk - my github handle is @krchristie, so if you were meaning to tag me in your initial comment, that's not me.

vanaukenk commented 4 years ago

Updated above; thanks @krchristie

kltm commented 4 years ago

Also see #51 .

kltm commented 4 years ago

@vanaukenk Could you check to see if these are available now?

kltm commented 4 years ago

From the testing I've done, I believe this is cleared. Please re-open if there are issues.

krchristie commented 4 years ago

It works for me to use RGD:1309181, the ID I reported a problem with to @vanaukenk