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geneontology / neo

noctua entity ontology
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consider updating wormbase expansion #61

Open balhoff opened 3 years ago

balhoff commented 3 years ago

We're using, e.g. http://identifiers.org/wormbase/WBGene00000001, however this doesn't resolve. Biolink model is using https://identifiers.org/wb/WBGene00000001, which does resolve. Changing this would probably require a batch replacement within Noctua models.

balhoff commented 3 years ago

Related: https://github.com/biolink/biolink-model/issues/530

cmungall commented 3 years ago

Looks like we should use wb. We use this as the prefix in gaf too.

Let's collect all the global updates we have to do e.g. tair, and do them all together

On Mon, Nov 30, 2020 at 11:02 AM Jim Balhoff notifications@github.com wrote:

Related: biolink/biolink-model#530 https://github.com/biolink/biolink-model/issues/530

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balhoff commented 3 years ago

See also https://github.com/prefixcommons/biocontext/issues/34