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geneontology / noctua-alliance-pathway-preview

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Incorrect arrow in the "alliance style" pathway images #9

Open ValWood opened 2 years ago

ValWood commented 2 years ago

I used the "directness" qualifier, I always select "direct", but this resolves in the pathway diagram as dotted lines instead of solid lines.

ValWood commented 2 years ago

HI @vanaukenk did you see this? I just wanted to check whether it is on the correct tracker.

ValWood commented 2 years ago

It's quite a critical bug (I am not able to add labels)

vanaukenk commented 2 years ago

@ValWood Can you paste a link to your model? I'll take a look. I have a model with both types of regulates relations (i.e. direct and just regulates) and it displays as expected in the pathway preview. Also, I'm moving this ticket to the alliance-pathway-preview tracker.

kltm commented 2 years ago

From @ValWood It is this one [http://noctua.berkeleybop.org/workbench/noctua-alliance-pathway-preview/?model_id=gomodel:6258b8f300000725](http://noctua.berkeleybop.org/workbench/noctua-alliance-pathway-preview/?model_id=gomodel:6258b8f300000725

kltm commented 2 years ago

(@ValWood please remember to remove your token from the URL is you are copying and pasting from the URL.)

vanaukenk commented 2 years ago

@ValWood

I think this is a case of curation policy getting a bit ahead of Alliance Pathway display. I'd like to clarify a point about existing models, but then will have Tremayne update the Alliance Pathway display.

Thanks for raising this issue.