geneontology / noctua-annotation-review

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Simpler way to review standard annotations in Noctua #50

Open pgaudet opened 1 year ago

pgaudet commented 1 year ago

From the Swiss-Prot group:

For annotations that are not pathway-like GO-CAMs (ie, not connected), there should be a simpler way to review annotations, more P2GO-like, ie getting the list of annotations either by searching for a PMID or for a gene id.

This would be required for SP to switch from P2GO to Noctua as the main curation tool.

Thanks, Pascale

tmushayahama commented 1 year ago

We can approach this by maybe start to think how we should display the annotations that are not pathway-like. What are your thoughts? a table like pathway preview? or a row like amigo row? Then once we make a display view we can easily edit it inline like annotation review. How does P2GO do it?

tagging @pgaudet @vanaukenk @ukemi

pgaudet commented 1 year ago

Here's the P2GO display:

image

In this case not all curators are allowed to edit the annotations, which is why some information is not 'editable' , ie not in boxes.

Thanks, Pascale

vanaukenk commented 5 months ago

Adding this to the Noctua standard annotation UI project to make sure that once we have a way of displaying 'standard' annotations, the display meets curator needs.

See also: https://github.com/geneontology/go-shapes/issues/306 https://github.com/geneontology/go-shapes/pull/307