geneontology / noctua-form-legacy

Simple annoton editor workbench for Noctua.
BSD 3-Clause "New" or "Revised" License
3 stars 3 forks source link

issues with new format of gene identifiers #66

Closed krchristie closed 6 years ago

krchristie commented 6 years ago

Hi,

I noticed that the display of gene product IDs has changed from the way it used to look, which I liked a lot since it displayed the gene name, and then showed the MOD ID, in this case from MGI, parenthetically: 20180426-6-tableviewshowingmissingalleleid

However, today, when entering new annotations, I am getting this longer and less human readable display: 20180507-bponly-sae-tv

In addition, older models (e.g. http://68.181.125.145:8910/editor/graph/gomodel:5ae3d45e00000619), now fail to translate the MGI ID for the gene product into the gene symbol and are giving me errors for "GP enables MF" and "MF part_of BP" triples: 20180507-previouslyenteredgp-ids-nottranslated

krchristie commented 6 years ago

Also, this new ID format is too long in the pulldown menu for GPs in the SAE, such that I cannot see the actual gene symbol to even know what I am selecting:

20180507-newidformat-pulldownmenu

Obviously, the software people should be deciding what is going on under the hood, but please do not show me the "http://identifiers.org/mgi/" at all. Whatever you choose to put under the hood, please only show curators the part that translates to the database prefix and the ID, e.g. MGI:123456 (or if you have to for MGI considering the choice to have saved the prefix within the ID field, MGI:MGI:123456).

This is probably not the right place for this comment, but I'm putting it here for now, as I do not have time right now to find the right tracker, but the comment about not showing "http://identifiers.org/mgi/" portion at all also applies to the pulldown menu for GPs in the Graph, though that one is readable; it is just distracting to have so much identical text that is not useful.

kltm commented 6 years ago

@krchristie @tmushayahama We're going to try to re-run the autocomplete system now.

kltm commented 6 years ago

I believe this should now be cleared--the load looks good. @cmungall @yy20716