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geneontology / noctua-form

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Qualifier: contributes_to #150

Open suzialeksander opened 3 years ago

suzialeksander commented 3 years ago

It appears contributes_to is still valid when 2+ subunits are shown to have an activity but there is no evidence they have the activity separately (and the subunits are not a proper complex as defined by ComplexPortal).

How do we use contributes_to in Form, or even GE?

vanaukenk commented 3 years ago

@suzialeksander You can make 'contributes to' annotations in the graph editor by adding the gene and activity nodes separately using the Add Individual section, and then linking them with the 'contributes to' relation. See the example: http://noctua.geneontology.org/editor/graph/gomodel:61452e3d00000690 I'll leave this ticket open for further discussion on how to implement this on the form.

vanaukenk commented 3 years ago

Note that use of 'contributes to' is currently not modeled in the ShEx.

vanaukenk commented 3 years ago

See: https://github.com/geneontology/go-shapes/issues/269

suzialeksander commented 1 year ago

bumping this ticket as we are still running into this. Need to be able to use contributes_to in Form.