geneontology / noctua-form

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Find in model from statistics menu not quite working #156

Open vanaukenk opened 2 years ago

vanaukenk commented 2 years ago

In this model: http://noctua-dev.berkeleybop.org/workbench/noctua-form/?model_id=gomodel%3AMGI_MGI_98956

I searched for the instance of 'cysteine-type endopeptidase....' from the MF list:

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but the resulting search doesn't take me to where that annotation is in the model:

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Since there are a lot of annotations in this model, do we need to Expand All and migrate to the match by default when we perform the search to make sure that the match is easy to find in bigger models?

vanaukenk commented 2 years ago

The reason this MF term is not viewable in the form table is that it is a 'positively regulates' extension of a BP term which, in this specific case, is a GO-CAM translation of the 'regulates o occurs in' AE relation. We can discuss adding the +/- regulates extension relations to BP on the form and tables on a future workbenches call.

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ukemi commented 2 years ago

I thought the plan was to get rid of processes that regulate functions. Depending on how soon we implement that plan, this would go away.

vanaukenk commented 2 years ago

Let's discuss again on a workbenches call; perhaps we can not worry about this in the short term.