geneontology / noctua-models

This is the data repository for the models created and edited with the Noctua tool stack for GO.
http://noctua.geneontology.org/
Creative Commons Attribution 4.0 International
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Drop-n-reload of YeastPathways models using 2021-01-25 dropbox files #176

Closed dustine32 closed 3 years ago

dustine32 commented 3 years ago

Two main things in this update:

  1. New data
  2. https://github.com/geneontology/pathways2GO/commit/c7d80f236b17c238e4b15df142940ea697aee623 fixes some of the entity mapping issues for GP and CHEBI terms

Dropped 187 existing models by grepping for "pathway.yeastgenome.org":

grep -r pathway.yeastgenome.org models | cut -d ":" -f1 | sort | uniq | wc -l
187

We should figure out a better way to identify these models for future "clean ups." Another grep-able pattern is "imported from: Saccharomyces Genome Database".

Replaced with 222 models generated from the files in dropbox https://stanford.app.box.com/s/mhywvmcgmd9s7hfqnhllzt0mpe3ypc1s mentioned in this ticket https://github.com/geneontology/go-ontology/issues/20091 and dated 2021-01-25.

kltm commented 3 years ago

In dustin32 we trust.