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geneontology / noctua-models

This is the data repository for the models created and edited with the Noctua tool stack for GO.
http://noctua.geneontology.org/
Creative Commons Attribution 4.0 International
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Regen of 2021-10-06 data from go_cam_mgi.gpad #205

Closed dustine32 closed 2 years ago

dustine32 commented 2 years ago

Latest MGI import models for testing using new upstream data. Details in PR to mgi-go-cams repo: https://github.com/geneontology/mgi-go-cams/pull/2

Note: This new data caused an MGI model count jump from 13475 to 28033. Also, there are some GPI missing ID errors listed in the report here.

Tagging @ukemi

kltm commented 2 years ago

Sure, why not?

dustine32 commented 2 years ago

Thanks @kltm!

Adding this new note for @ukemi as the OWL consistency checks just finished. Only one model failed: MGI:MGI:2684893

Luckily there are only three annotations for this gene in the upstream file so, should be quick to figure out:

MGI:MGI:2684893         RO:0002327      GO:0003674      MGI:MGI:2156816|GO_REF:0000015  ECO:0000307                     2010-02-02      MGI             creation-date=2010-02-02|modification-date=2010-02-02|contributor-id=https://orcid.org/0000-0003-3394-9805
MGI:MGI:2684893         RO:0001025      GO:0005634      MGI:MGI:6359626|PMID:27165042   ECO:0000314                     2021-02-26      MGI     BFO:0000050(CL:0000017)|BFO:0000050(CL:0000023),RO:0002092(GO:0000239)  creation-date=2021-02-26|modification-date=2021-02-26|contributor-id=https://orcid.org/0000-0002-9796-7693
MGI:MGI:2684893         RO:0002331      GO:0008150      MGI:MGI:2156816|GO_REF:0000015  ECO:0000307                     2010-02-02      MGI             creation-date=2010-02-02|modification-date=2010-02-02|contributor-id=https://orcid.org/0000-0003-3394-9805