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geneontology / noctua-models

This is the data repository for the models created and edited with the Noctua tool stack for GO.
http://noctua.geneontology.org/
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two models with same ontology IRI #265

Open balhoff opened 8 months ago

balhoff commented 8 months ago

These two files both have the same ontology IRI:

https://github.com/geneontology/noctua-models/blob/master/models/8b595d9e-fc3c-4598-82b5-35c067c4226f.ttl https://github.com/geneontology/noctua-models/blob/master/models/pombase_generated_TOR_signaling.ttl

The ontology IRI is http://model.geneontology.org/8b595d9e-fc3c-4598-82b5-35c067c4226f.

Only the first one encountered by the loader is able to be loaded into Blazegraph, so the other is just lurking in the repo.

kltm commented 8 months ago

@balhoff I believe there are more than those two. E.g. https://github.com/geneontology/noctua-models/issues/158. When loading, IIRC, a grip of them come up. If you can wait through the outage tomorrow, I'll try and get you a listing.

kltm commented 8 months ago

@balhoff Noting output

2024-01-11 16:09:51,546 INFO  (org.geneontology.minerva.cli.CommandLineInterface:560) loading gocams from /home/sjcarbon/local/src/git/noctua-models/models/
2024-01-11 16:09:51,844 ERROR (org.geneontology.minerva.cli.CommandLineInterface:577) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/sjcarbon/local/src/git/noctua-models/models/ZFIN_ZDB-GENE-070117-2407.ttl http://model.geneontology.org/ZFIN_ZDB-GENE-070117-2407
2024-01-11 16:09:51,844 ERROR (org.geneontology.minerva.cli.CommandLineInterface:577) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/sjcarbon/local/src/git/noctua-models/models/SYNGO_801.ttl http://model.geneontology.org/SYNGO_801
2024-01-11 16:09:51,845 ERROR (org.geneontology.minerva.cli.CommandLineInterface:577) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/sjcarbon/local/src/git/noctua-models/models/MGI_MGI_1924287.ttl http://model.geneontology.org/MGI_MGI_1924287
2024-01-11 16:09:51,844 ERROR (org.geneontology.minerva.cli.CommandLineInterface:577) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/sjcarbon/local/src/git/noctua-models/models/MGI_MGI_1342542.ttl http://model.geneontology.org/MGI_MGI_1342542
2024-01-11 16:09:51,844 ERROR (org.geneontology.minerva.cli.CommandLineInterface:577) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/sjcarbon/local/src/git/noctua-models/models/R-HSA-879518.ttl http://model.geneontology.org/R-HSA-879518
[...]
2024-01-11 16:19:09,297 ERROR (org.geneontology.minerva.cli.CommandLineInterface:577) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/sjcarbon/local/src/git/noctua-models/models/8b595d9e-fc3c-4598-82b5-35c067c4226f.ttl http://model.geneontology.org/8b595d9e-fc3c-4598-82b5-35c067c4226f
[...]
kltm commented 2 weeks ago

Noting that, for whatever reason, I'm only seeing one now:, as originally reported:

2024-08-23 13:29:50,533 ERROR (org.geneontology.minerva.cli.CommandLineInterface:582) Attempted to load gocam ttl file into database but gocam with that iri already exists, skipping /home/sjcarbon/local/src/git/noctua-models/models/8b595d9e-fc3c-4598-82b5-35c067c4226f.ttl http://model.geneontology.org/8b595d9e-fc3c-4598-82b5-35c067c4226f

odd.