Closed balhoff closed 1 month ago
@balhoff Unfortunately, we can't practically use this as it must be coordinated with an outage. From experience, there will likely be conflicts due to the changes that occur between now and the next outage. We'll need to coordinate the fix to make the changes on the models once the outage begins. I don't suppose you have a sed
command you used?
@kltm I thought you might say that. Here is the command (on MacOS, sed
may differ on Linux), run in models
directory:
find . -type f -name "*.ttl" -exec sed -i '' -E 's/<taxon:([[:digit:]]+)>/<http:\/\/purl.obolibrary.org\/obo\/NCBITaxon_\1>/g' {} +
Cheers! We'll try that command next time around.
Fixes #277.