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geneontology / noctua-models

This is the data repository for the models created and edited with the Noctua tool stack for GO.
http://noctua.geneontology.org/
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How to delete a model? -> (ref: gomodel:598826eb00000261) #42

Closed BarbaraCzub closed 7 years ago

BarbaraCzub commented 7 years ago

How do I delete this model?

I previously changed its state to 'delete' and marked it as 'Deprecated', but when I logged into Noctua this morning the state for this model was displayed as 'development' again.

I will not be doing any more work on this model, hence I marked it as 'delete', and made a new one instead (gomodel:598826eb00000503).

(optional back ref: http://noctua.berkeleybop.org/editor/graph/gomodel:598826eb00000261)

cc: @RLovering

kltm commented 7 years ago

This issue was moved to geneontology/noctua#485

kltm commented 7 years ago

@BarbaraCzub Non-model specific issues and software issues should be in the noctua tracker, not the noctua-models tracker.

kltm commented 7 years ago

That is all you need to do. At some future date a purging process will be added, as well as a default of hiding them, but in general curators can only request the delete. In some cases, we may choose to manually destroy a model immediately, but that will be rare.

BarbaraCzub commented 7 years ago

How do I know whether this is a model-specific issue, or not?

For this specific model I had previously marked it as 'delete' and 'depreciated' but its state still became reverted back to 'development' (when I intended for it to be deleted).

I have no way of knowing whether the issue is model-specific, or affects Noctua overall.

However, I previously started developing a model, entitled: 'SynGO no. 1b SGT-CSP1-HSC70_PMID:11580898', which is nowhere to be found, when I log into Noctua, and I never marked this one as 'delete'. And I am not suggesting that it should be reinstated (because the authors never confirmed the species to me, so I would not be able to continue working on it), but I probably should have received some notification, when it was being deleted. After all it was in the 'development' state, and not the 'delete' state.

So perhaps the case of the missing model should have been a hint to me that this 'delete' [changed back to] 'development' issue is indeed (similarly?) a Noctua-wide issue, but I simply do not know. (Something could have happened just to one model).

cc: @RLovering

kltm commented 7 years ago

@BarbaraCzub If it helps, if it looks like a mechanism issue, that's the Noctua tracker; if it is a question about modeling, that would be in this tracker.

kltm commented 7 years ago

A discussion of delete and reversion issues can be found from here: https://github.com/geneontology/noctua/issues/485#issuecomment-326360858

BarbaraCzub commented 7 years ago

ok, thanks.