problems with export of relations in noctua model

geneontology / noctua-models

This is the data repository for the models created and edited with the Noctua tool stack for GO.

http://noctua.geneontology.org/

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problems with export of relations in noctua model #7

Open dosumis opened 9 years ago

dosumis commented 9 years ago

Looking at this nocuta model:

https://github.com/geneontology/noctua-models/blob/master/models/542732ad00000010

Couldn't get a query for individuals using 'occurs in' to work despite finding direct usage. When I clicked on the object property I got to this:

http://purl.obolibrary.org/obo/mp/mp-equivalent-axioms-subq#occurs_in

Expected this to

cmungall commented 9 years ago

I'll fix this in this model. I'm hoping this is an early model and not an issue with the existing tool r import chain. Either way we need to document from a technical perspective how relation selection works.

cmungall commented 9 years ago

Oh right the issue isn't with the model, it's the import chain. The model uses BFO_0000066 as expected.

dosumis commented 9 years ago

Oh right the issue isn't with the model, it's the import chain. The model uses BFO_0000066 as expected.

Not too surprising. Protege gets confused when two entities share a name.

dosumis commented 9 years ago

Should have tested first, but Protege was taking its time switching rendering

cmungall commented 9 years ago

So it looks like go-lego.owl import chain should be cleared up. We may have crammed some experimental stuff in there