search

geneontology / noctua-standard-annotations

0 stars 0 forks source link

Display NOT on table for negative annotations #47

Open krchristie opened 5 days ago

krchristie commented 5 days ago

Hi,

@LiNiMGI and I have noticed that the table of annotations does not display a "NOT" to indicate when a negative annotation has been made.

We were looking at previously existing annotations in the model for Dmrtb1 and I have added some additional ones. It is clear that the Standard Annotations form completely fails to indicate the existence of the NOT qualifier when it is supposed to be present.

The original NOT annotation was "NOT sequence-specific DNA binding". I have added two other NOT annotations (to "NOT RNA polymerase I activity" and "NOT RNA polymerase II activity" with various evidence codes and both annotations show up, but the NOT qualifier is not shown in the table in the Standard Annotations editor.

Below are screen shots of the Form Editor and the Standard Annotations editor for the gene-centric model for Dmrtb1 from mouse. In both screenshots, I have highlighted the capitalized form of the word "NOT":

NOTannots-FormEditor NOTannots-StandardAnnotations

LiNiMGI commented 5 days ago

Also, for some reason, Standard Annotations form missing the IKR evidence for "NOT sequence-specific DNA binding". thanks, Li

krchristie commented 4 days ago

Also, for some reason, Standard Annotations form missing the IKR evidence for "NOT sequence-specific DNA binding". thanks, Li

I'm planning to put this in a separate ticket. There appears to be an issue with displaying annotations that are displayed as "one" annotation with multiple evidence codes in the Form Editor; in the Standard Annotations Editor, it looks like one evidence code is not displayed.

vanaukenk commented 3 days ago

Thanks @krchristie and @LiNiMGI I'll also go through this carefully and let you know if we need any more discussion.