geneontology / noctua

Graph-based modeling environment for biology, including prototype editor and services
http://noctua.geneontology.org/
BSD 3-Clause "New" or "Revised" License
36 stars 13 forks source link

Create dev/beta instance of all of the stack #133

Closed kltm closed 9 years ago

kltm commented 9 years ago

This will initially be to demo the new models and help people look at the conversion process. Later on it will be the place to try out changes before sending them to "production".

kltm commented 9 years ago

This is mostly working as of last night.

kltm commented 9 years ago

There seems to be some problem with login on dev.

kltm commented 9 years ago

For the record, the supervisor/d conf files that we're using for the dev setup:

[program:minerva-dev]
directory=/home/swdev/local/src/git/minerva/minerva-server/bin
command=bash -c "java -Xmx${MINERVA_MEMORY} -jar minerva-server.jar -c ${GENEONTOLOGY_SVN}/ontology/extensions/catalog-v001.xml -g http://purl.obolibrary.org/obo/go/extensions/go-lego.owl --set-important-relation-parent http://purl.obolibrary.org/obo/LEGOREL_0000000 -f ${NOCTUA_MODELS} --port ${MINERVA_PORT}"
autostart=true
autorestart=true
startsecs=120
startretries=3
stopwaitsecs=60
redirect_stderr=true
stdout_logfile=/tmp/minerva-dev-err.log
stderr_logfile=None
stdout_logfile_maxbytes=150MB
stdout_logfile_backups=0
user=swdev
environment=HOME=/home/swdev,MINERVA_MEMORY=4G,MINERVA_PORT=6799,GENEONTOLOGY_SVN=/home/swdev/local/src/svn/geneontology.org/trunk/,NOCTUA_MODELS=/home/swdev/local/src/git/noctua-models/models/
[program:barista-dev]
# Only works because the old noctua/barista is still in go-mme/.
directory=/home/swdev/local/src/git/noctua
# May need to time minerva startup for this.
command=node barista.js
autostart=true
autorestart=true
startsecs=120
startretries=3
stopwaitsecs=60
redirect_stderr=true
stdout_logfile=/tmp/barista-dev-err.log
stderr_logfile=None
stdout_logfile_maxbytes=150MB
stdout_logfile_backups=0
user=swdev
environment=BARISTA_LOCATION="http://barista-dev.berkeleybop.org:3399",BARISTA_PORT=3399,MSGDEBUG=1,HOME=/home/swdev
[program:noctua-dev]
directory=/home/swdev/local/src/git/noctua
# May need to time minerva startup for this.
command=node noctua.js
autostart=true
autorestart=true
startsecs=120
startretries=3
stopwaitsecs=60
redirect_stderr=true
stdout_logfile=/tmp/noctua-dev-err.log
stderr_logfile=None
stdout_logfile_maxbytes=150MB
stdout_logfile_backups=0
user=swdev
environment=MINERVA_DEFINITION=minerva_public_dev,BARISTA_LOCATION="http://barista-dev.berkeleybop.org:3399",NOCTUA_HOST="noctua-dev.berkeleybop.org",NOCTUA_PORT=8909,MSGDEBUG=1,HOME=/home/swdev