Create wiki documentation for new MF-MF relations

[vanaukenk]

• [x] constitutively upstream of
• [x] removes input for
• [x] indirectly positively regulates
• [x] indirectly negatively regulates

Link to proposal: https://docs.google.com/document/d/171G2vCVlMPmoeFJE1rNvpzAwEv_IXncW4OJNaoJQ3bo Put the new pages here: https://wiki.geneontology.org/Annotation_Relations#Molecular_Function_to_Molecular_Function Link to new template: https://docs.google.com/document/d/1H9_VLRFIMPkNSOJB9tKavRBhL7AGSJIRTl_z9zD7q2I

To do:

1. Create a wiki page
2. On each page, include an Overview, Usage Examples, Link to RO, Date Last Reviewed
3. Quality Control will include a link to the ShEx and any relevant GO rules

[ukemi]

https://wiki.geneontology.org/Constitutively_upstream_of Updated to new template

• [x] Still need to add examples
• [x] Update page to include a link to the RO class
• [x] add this relation to the Shex
• [x] Add GO-CAM examples once this relation is available in Noctua.

[ukemi]

https://wiki.geneontology.org/Removes_input_for Updated to new template

• [x] Still need to add examples
• [x] Update page to include a link to the RO class
• [x] add this relation to the Shex
• [x] Add GO-CAM examples once this relation is available in Noctua. Example added without relation.

[ukemi]

https://wiki.geneontology.org/Indirectly_causally_upstream_of Updated to new template

• [x] Still need to add examples-- No examples as not to be used directly in annotation or GO-CAM.
• [x] Update page to include a link to the RO class
• [x] add this relation to the Shex (Not used for annotation, so not added)
• [x] Add GO-CAM examples once this relation is available in Noctua.

[ukemi]

https://wiki.geneontology.org/Causally_upstream_of_negative_effect Updated to new template

• [x] Still need to add examples--
• [x] Update page to include a link to the RO class
• [x] add this relation to the Shex
• [x] Add GO-CAM examples once this relation is available in Noctua.

[vanaukenk]

@pgaudet @ukemi Two questions for discussion on Thursday: 1) Which version, i.e. workbench view, of the model should we link to from the wiki documentation page? 2) Do we want to include a screenshot on the wiki of the relevant causal relation and, if so, same question as above - from which workbench view?

[ukemi]

Good questions. In my examples I linked to the graph, but maybe that's not best.

[vanaukenk]

From 2023-02-02 call with @ukemi and @pgaudet

We will include screenshots of GO-CAMs, taken of models in the pathway editor VPE, in our relations documentation.