Outage tasks for 2022-10-27

geneontology / noctua

Graph-based modeling environment for biology, including prototype editor and services

http://noctua.geneontology.org/

BSD 3-Clause "New" or "Revised" License

37 stars 13 forks source link

Outage tasks for 2022-10-27 #795

Closed kltm closed 1 year ago

kltm commented 1 year ago

[x] Run noctua-models-migration pipeline for @vanaukenk (day before? morning of?) to get report
[x] Refresh minerva code with latest from minerva master
[x] Run replaced_by term update on blazegraph (@vanaukenk)
[x] Cycle minerva to get latest ontology
[x] Update NEO
[x] Prep ticket for next outage

vanaukenk commented 1 year ago

@kltm @balhoff Just want to double check that we will pull in the newest version of RO during tomorrow's outage so we can move forward with documentation/examples, and any UI work, for the new MF-MF causal relations. Thx.

balhoff commented 1 year ago

I just refreshed the RO import in GO. I think we need a successful snapshot between now and then for it to be available.

vanaukenk commented 1 year ago

Okay, makes sense. Thanks @balhoff

kltm commented 1 year ago

snapshot already moving at midnight, so nothing until next run on the 28th. Early on the 29th would be the earliest it appears.

vanaukenk commented 1 year ago

@kltm so that means that unless we do another go-lego build for Noctua after the next snapshot, we would need to wait another two weeks before getting the new RO relations in, right?

kltm commented 1 year ago

@vanaukenk If we are not considering any "outages" besides currently scheduled ones, that is correct.

kltm commented 1 year ago

@vanaukenk Diff ready: http://skyhook.berkeleybop.org/noctua-models-migrations/reports/ontology-replaced-by.diff Let me know if you see any issues.

vanaukenk commented 1 year ago

Checked the diff. There are four MGI models affected and all looks okay.

kltm commented 1 year ago

Pass reported from @vanaukenk