Outage tasks for 2022-12-01

geneontology / noctua

Graph-based modeling environment for biology, including prototype editor and services

http://noctua.geneontology.org/

BSD 3-Clause "New" or "Revised" License

36 stars 13 forks source link

Outage tasks for 2022-12-01 #803

Closed kltm closed 1 year ago

kltm commented 1 year ago

[x] Run noctua-models-migration pipeline for @vanaukenk (day before? morning of?) to get report
[x] Merge in https://github.com/geneontology/minerva/pull/505
[x] Refresh minerva code with latest from minerva master
[x] Run replaced_by term update on blazegraph (@vanaukenk)
[x] Cycle minerva to get latest ontology
[x] Merge in https://github.com/geneontology/noctua/issues/804
[ ] ~~Update NEO~~
[x] Prep ticket for next outage

kltm commented 1 year ago

Noting to @vanaukenk @suzialeksander that this later than usual due to Thanksgiving holiday. If we want to drop in some NEO updates here and there, we can do that at short notice.

kltm commented 1 year ago

@vanaukenk Diff ready: http://skyhook.berkeleybop.org/noctua-models-migrations/reports/ontology-replaced-by.diff

vanaukenk commented 1 year ago

@kltm I checked the diff. All looks okay. 1 MGI and 2 Reactome import models are affected by changes in DNA repair BP terms: https://github.com/geneontology/go-ontology/issues/22883