Outage tasks for 2024-03-14

geneontology / noctua

Graph-based modeling environment for biology, including prototype editor and services

http://noctua.geneontology.org/

BSD 3-Clause "New" or "Revised" License

36 stars 13 forks source link

Closed kltm closed 3 months ago

kltm commented 4 months ago

[x] Send reminder email to go-consortium mailing list
[x] Run noctua-models-migration pipeline for (@vanaukenk) (automated to day before) to get report
http://skyhook.berkeleybop.org/noctua-models-migrations/reports/
[x] Refresh minerva code with latest from minerva master
[x] Merge in new SynGO models (@dustine32)
[x] Run replaced_by term update on blazegraph (@vanaukenk)
[x] Cycle minerva to get latest ontology
[x] Update NEO
[x] Prep ticket for next outage
[x] @vanaukenk To confirm "new" ontology terms available (or not)

dustine32 commented 4 months ago

Added the "Merge in new SynGO models" step. I'll make this PR just before the outage and coordinate with @kltm.

kltm commented 4 months ago

Looping in @vanaukenk on the addition

kltm commented 3 months ago

@vanaukenk We'll need a call on this before proceeding with any NEO update: https://github.com/geneontology/neo/issues/118.

vanaukenk commented 3 months ago

kltm commented 3 months ago

@vanaukenk The term migration test has returned results.

kltm commented 3 months ago

From a thread with @pgaudet and @vanaukenk , I'll go ahead and drop the sanity count.

vanaukenk commented 3 months ago

Checked the diff and all updates are consistent with recent ontology changes.