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geneontology / noctua

Graph-based modeling environment for biology, including prototype editor and services
http://noctua.geneontology.org/
BSD 3-Clause "New" or "Revised" License
38 stars 12 forks source link

Many existing annotation are not visible in Noctua #876

Closed ValWood closed 6 months ago

ValWood commented 7 months ago

Many existing annotation are not visible in Noctua For example:

FOr spc7 I see no MF annotations

Screenshot 2024-04-23 at 14 22 31

even though they are present: https://www.pombase.org/gene/SPCC1020.02

I don't want to remake the annotations unless they are duplicated (and also not time effective).

pgaudet commented 7 months ago

Searching for MF:

image

Searching for BP

image

There is a little lag; could that be the problem?

ValWood commented 7 months ago

No I don't think so. I'm aware of the lag, but this is in addition, they never appear. It is happening to @PCarme too

vanaukenk commented 7 months ago

@ValWood Click on one of the specific terms. Do you see the evidence then?

ValWood commented 7 months ago

No it's random. Sometimes I see the terms, and sometimes, I don't. In the cases where I don't see them I have been adding manually

ValWood commented 7 months ago

In the other case, I can see the terms, I select them but the annotation doesn't appear

ValWood commented 7 months ago

In this example, only one of the existing annotations is visible (IMP), although I think I have seen EXP (will double-check)

Screenshot 2024-04-23 at 15 52 48
PCarme commented 7 months ago

In this example I can see annotations with EXP evidence.

image

ValWood commented 7 months ago

Yes I have seen EXP annotations too, so it isn't that...

ValWood commented 6 months ago

I think a one was a user error. I think I wasn't selecting the term when I had a single term, only selecting the evidence