2024-05-30 - Githubissues

geneontology / noctua

Graph-based modeling environment for biology, including prototype editor and services

http://noctua.geneontology.org/

BSD 3-Clause "New" or "Revised" License

38 stars 12 forks source link

2024-05-30 #887

Closed kltm closed 5 months ago

kltm commented 6 months ago

[x] Send reminder email to go-consortium mailing list
[x] Run noctua-models-migration pipeline for (@vanaukenk) (automated to day before) to get report
http://skyhook.berkeleybop.org/noctua-models-migrations/reports/
[x] Refresh minerva code with latest from minerva master
[x] Run replaced_by term update on blazegraph (@vanaukenk)
[x] Cycle minerva to get latest ontology
[x] Update NEO
[x] Prep ticket for next outage

kltm commented 5 months ago

@vanaukenk Report made as above, but oddly nothing?

vanaukenk commented 5 months ago

Thanks for the report @kltm

Yes, I always worry a bit when the report is empty, but my perusal of recent ontology obsoletions doesn't find any obsoletions with replaced_by entries, so the report is probably accurate.

That said, if we are thinking about future improvements to the GO-CAM/Noctua infrastructure, perhaps having a more explicit and thorough report of recent ontology updates vs what is in the model store might be both helpful and comforting.