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geneontology / noctua

Graph-based modeling environment for biology, including prototype editor and services
http://noctua.geneontology.org/
BSD 3-Clause "New" or "Revised" License
38 stars 12 forks source link

Auto import has_part entities for complexes #905

Open ValWood opened 4 months ago

ValWood commented 4 months ago

It would be great if all of the subunits of the complex were instantiated from the data in the GPAD?GPI file (it's really tedious to have to enter them using has_part)

ValWood commented 1 month ago

This would be really great for efficiency It took over an hour to add these: http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A663d668500000596

also I would want to be able to import existing annotations from the parts onto the complex. I don't want to make these annotations again so I did them with NAS for now. I will switch them when the functionality is avaiable.

sjm41 commented 1 month ago

It would be great if all of the subunits of the complex were instantiated from the data in the GPAD?GPI file

I agree. As long as the imported subunit list could then be edited (to add missing members, remove extraneous members, refine context-specific composition), then this should work well.

Maybe pulling in complex composition based on existing CC annotations should be optional, since its utility would depend on how good your CC annotations terms are....