Dockerfile.minerva currently produces a bad image

geneontology / noctua_app_stack

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Dockerfile.minerva currently produces a bad image #12

Open kltm opened 3 weeks ago

kltm commented 3 weeks ago

In geneontology/minerva:v4:

bash-4.4$ /app/run.sh 
bash: /app/run.sh: /bin/bash\nset: bad interpreter: No such file or directory
bash-4.4$

kltm commented 3 weeks ago

Tagging @mugitty

kltm commented 2 weeks ago

It seems like we are now having issues with the minerva runner image taking 2GB only. I'm not sure how this even worked, but I'm guessing that the previous version of the script didn't pass in the variable somehow and the default java value was used. Now that the script was fixed, it is using the explicit 2GB, which causes a heap error pretty quickly. We need to set this up to use the available memory (which I believe was 24GB).