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geneontology / obographs

Basic and Advanced OBO Graphs: specification and reference implementation
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Stale AbstractEdge Definition #108

Closed iimpulse closed 1 week ago

iimpulse commented 1 week ago

the latest ontology releases attach a field 'propertyType' to an edge causing downstream breaking changes.

pnrobinson commented 1 week ago

e.g., 

{
      "id" : "http://purl.org/dc/elements/1.1/creator",
      "type" : "PROPERTY",
      "propertyType" : "ANNOTATION"
    },

@ielis -- should we add this change to phenol ? We cannot currently load hp.json in phenol

ielis commented 1 week ago

I think Mike has been already working on a fix on Phenol's side, this should resolve the issues: https://github.com/monarch-initiative/phenol/pull/466

matentzn commented 1 week ago

Biiiiig relief if this turns out to work!