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geneontology / obographs

Basic and Advanced OBO Graphs: specification and reference implementation
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Property node missed for http://xmlns.com/foaf/0.1/depicts #26

Open dosumis opened 7 years ago

dosumis commented 7 years ago

This OWL file has the property: " http://xmlns.com/foaf/0.1/depicts" http://purl.obolibrary.org/obo/fbbt/vfb/vfb_ext.owl

But it appears to be missing from the JSON rolled by owltools:

complete node set: 

{'id': 'http://purl.obolibrary.org/obo/OBI_0000312',
  'lbl': 'is_specified_output_of',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/CARO_0030002',
  'lbl': 'expression pattern',
  'type': 'CLASS'},
 {'id': 'http://purl.obolibrary.org/obo/RO_0002350',
  'lbl': 'member_of',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000001',
  'lbl': 'has_channel',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/RO_0002351',
  'lbl': 'has_member',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/C888C3DB-AEFA-447F-BD4C-858DFE33DBE7',
  'lbl': 'has_exemplar',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000002',
  'lbl': 'has_background_channel',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000003',
  'lbl': 'has_signal_channel',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000014',
  'lbl': 'channel',
  'type': 'CLASS'},
 {'id': 'http://purl.obolibrary.org/obo/c099d9d6-4ef3-11e3-9da7-b1ad5291e0b0',
  'lbl': 'exemplar_of',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000005',
  'lbl': 'source_data_link',
  'type': 'PROPERTY'},
 {'id': 'http://purl.obolibrary.org/obo/fbbt/vfb/VFBext_0000006',
  'lbl': 'multi channel image',
  'type': 'CLASS'},
 {'id': 'http://purl.obolibrary.org/obo/fbbt/vfb/VFB_10000005',
  'lbl': 'cluster',
  'type': 'CLASS'}]
cmungall commented 7 years ago

looks like it's omitting nodes without labels