Inconsistency between go-plus.json and go-plus.owl/obo

[tonysawfordebi]

In go-plus.json GO:0080039 is shown as deprecated, while is go-plus.owl/obo it still appears as a valid, live term. { "id" : "http://purl.obolibrary.org/obo/GO_0080039", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", "val" : "http://purl.obolibrary.org/obo/GO_0016762" } ], "deprecated" : true }, "type" : "CLASS" }

[cmungall]

What is the versionIRIs?

owl is fine:

    <!-- http://purl.obolibrary.org/obo/GO_0080039 -->

    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0080039">
        <rdfs:subClassOf rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000227"/>
        <obo:IAO_0100001 rdf:resource="http://purl.obolibrary.org/obo/GO_0016762"/>
        <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
    </owl:Class>

The .obo is lagging. It's not officially supported:

http://geneontology.org/page/download-ontology

However it's not ideal to have it be out of date. Do you actively use it?

[tonysawfordebi]

OK - this appears to have been a timing issue... In we have: `

<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Catalysis of the hydrolysis of a beta-(1,4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of a xyloglucan or an oligosaccharide of xyloglucan.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">molecular_function</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GO:0080039</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">xyloglucan endotransglucosylase activity</rdfs:label>

</owl:Class>

Catalysis of the hydrolysis of a beta-(1,4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of a xyloglucan or an oligosaccharide of xyloglucan. EC:2.4.1.207 GOC:ask PMID:1400418 PMID:1554366 ` while in we have: ` true ` So what I was seeing yesterday in go-plus.json was correct, but go-plus.owl/obo were lagging behind. The only thing that I currently use go-plus.obo for is the extraction of taxon constraints, but the plan is to move across to consuming everything from go-plus.json as soon as the last few remaining wrinkles are ironed out.