Need a property "mergedWith" or something similar for obsolete terms

geneontology / obographs

Basic and Advanced OBO Graphs: specification and reference implementation

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Closed matentzn closed 1 year ago

matentzn commented 3 years ago

So we have two Terms:

A "label 1" B "label 2"

We merge them both into B "label 2"

There should be some way to understand from the JSON that A was merged into B.

balhoff commented 3 years ago

There is a pattern for this embedded in the OBO to OWL conversion in OWL API:

AnnotationAssertion(has obsolescence reason GO:2000695 terms merged) AnnotationAssertion(term replaced by GO:2000695 GO:0000920) AnnotationAssertion(owl:deprecated GO:2000695 "true"^^xsd:boolean)

cmungall commented 1 year ago

the json just follows the owl here, so I think we can close this?

matentzn commented 1 year ago

Sure I dont know why I made that issue anymore.