geneontology / obographs

Basic and Advanced OBO Graphs: specification and reference implementation
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Plan to overhaul this repository #95

Open cmungall opened 1 year ago

cmungall commented 1 year ago

geneontology was a good initial host but it probably makes sense to decouple. We originally had https://github.com/owlcollab/ which is where the oboformat standard lives.

the other items could be taken care of by adopting the linkml schema for obographs in OAK

julesjacobsen commented 1 year ago

When you say 'make it easier to maintain the java' do you mean 'refactor the FromOwl class' or 're-implement the immutables-based serialisation model'?

julesjacobsen commented 1 year ago

find out how https://github.com/geneontology/obographs/tree/master/schema json-schemas are generated

These are auto-generated from the Jackson annotations on the obographs-model classes by the test class obographs-core/src/test/java/org/geneontology/obographs/core/io/OgSchemaGeneratorTest.java

julesjacobsen commented 11 months ago

See also issue #104