cmungall
commented
8 years ago Thanks for the log output.
Unfortunately there is nothing about the golr connection here, or what it's doing in that 15 minute pause. I'll try and look later today. Suzi is traveling today, and Seth is in Japan
On 17 Jun 2016, at 7:55, pgaudet wrote:
Hello,
It happens rather frequently that PAINT annotation matrices do not load at all, or load partially. An example is PTHR11442, that I tried loading today (2016/06/17) several times. Until 9 AM CA time, nothing was loading. After 9 AM; the matrix only loaded annotation from Drosophila glob1 (Q9VF15). However, I know there is other data, for example for a mouse protein (P04247), which is not loaded.
I think it's a problem with the GO database being unaccessible by PAINT. Here's what the terminal window is spitting out: (it doesn't seem to realize it's not loading anything, but I can't claim too really understand this !)
Thanks, Pascale
ANNOTATION MATRIX NOT LOADED M-200278:paint2.0-beta pascalegaudet$ sh launchpaint.sh 2016-06-17 13:34:20,468 INFO (PaintYaml:45) Trying config found at: config/preferences.yaml 2016-06-17 13:34:20,798 INFO (PaintYaml:50) Using config found at: config/preferences.yaml 2016-06-17 13:34:21,712 INFO (PaintStartupTask:203) Loading Paint version 2.0-beta19 2016-06-17 13:34:37,618 INFO (class:571) View #4, Garbage0, is a garbage view--destroying 2016-06-17 13:34:47,255 INFO (LoginUtil:404) Logging in to Panther URL: http://paintcuration.usc.edu 2016-06-17 13:34:59,819 INFO (ParserWrapper:67) Start loading ontology: http://purl.obolibrary.org/obo/go.owl from: http://purl.obolibrary.org/obo/go.owl 2016-06-17 13:42:46,761 INFO (ParserWrapper:74) Finished loading ontology: http://purl.obolibrary.org/obo/go.owl from: http://purl.obolibrary.org/obo/go.owl 2016-06-17 13:42:47,370 INFO (Reasoner:117) ELK reasoner was created 2016-06-17 13:42:54,838 INFO (LoggingStageExecutor:70) Loading of Axioms started 2016-06-17 13:42:54,934 INFO (AbstractReasonerStage:161) Loading of Axioms using 2 workers 2016-06-17 13:43:03,373 WARN (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored: InverseObjectProperties(http://purl.obolibrary.org/obo/BFO_0000050 http://purl.obolibrary.org/obo/BFO_0000051) 2016-06-17 13:43:05,625 INFO (LoggingStageExecutor:103) Loading of Axioms took 10695 ms 2016-06-17 13:43:05,626 INFO (LoggingStageExecutor:70) Property Saturation Initialization started 2016-06-17 13:43:05,627 INFO (AbstractReasonerStage:161) Property Saturation Initialization using 2 workers 2016-06-17 13:43:05,628 INFO (LoggingStageExecutor:103) Property Saturation Initialization took 2 ms 2016-06-17 13:43:05,629 INFO (LoggingStageExecutor:70) Reflexive Property Computation started 2016-06-17 13:43:05,635 INFO (AbstractReasonerStage:161) Reflexive Property Computation using 2 workers 2016-06-17 13:43:05,660 INFO (LoggingStageExecutor:103) Reflexive Property Computation took 31 ms 2016-06-17 13:43:05,661 INFO (LoggingStageExecutor:70) Object Property Hierarchy and Composition Computation started 2016-06-17 13:43:05,680 INFO (AbstractReasonerStage:161) Object Property Hierarchy and Composition Computation using 2 workers 2016-06-17 13:43:05,689 INFO (LoggingStageExecutor:103) Object Property Hierarchy and Composition Computation took 27 ms 2016-06-17 13:43:05,689 INFO (LoggingStageExecutor:70) Context Initialization started 2016-06-17 13:43:05,690 INFO (AbstractReasonerStage:161) Context Initialization using 2 workers 2016-06-17 13:43:05,692 INFO (LoggingStageExecutor:103) Context Initialization took 3 ms 2016-06-17 13:43:05,693 INFO (LoggingStageExecutor:70) Consistency Checking started 2016-06-17 13:43:05,706 INFO (AbstractReasonerStage:161) Consistency Checking using 2 workers 2016-06-17 13:43:05,844 INFO (LoggingStageExecutor:103) Consistency Checking took 150 ms 2016-06-17 13:43:05,844 INFO (LoggingStageExecutor:70) Class Taxonomy Computation started 2016-06-17 13:43:05,856 INFO (AbstractReasonerStage:161) Class Taxonomy Computation using 2 workers 2016-06-17 13:43:30,634 INFO (LoggingStageExecutor:103) Class Taxonomy Computation took 24789 ms 2016-06-17 13:45:30,146 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q5AEL3) for 2 different genes: Gene:CaO19.255 Gene:CaO19.7887 2016-06-17 13:45:30,174 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,174 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,175 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,175 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,176 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,176 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,180 INFO (DisplayTree:70) There are 383 nodes in the PTHR31944 tree 2016-06-17 15:04:39,328 INFO (GUIManager:305) Exiting.
ANNOTATION MATRIX PARTIALLY LOADED M-200278:paint2.0-beta pascalegaudet$ sh launchpaint.sh 2016-06-17 15:26:40,772 INFO (PaintYaml:45) Trying config found at: config/preferences.yaml 2016-06-17 15:26:40,843 INFO (PaintYaml:50) Using config found at: config/preferences.yaml 2016-06-17 15:26:40,999 INFO (PaintStartupTask:203) Loading Paint version 2.0-beta19 2016-06-17 15:26:45,647 INFO (class:571) View #4, Garbage0, is a garbage view--destroying 2016-06-17 15:26:50,350 INFO (LoginUtil:404) Logging in to Panther URL: http://paintcuration.usc.edu 2016-06-17 15:27:00,725 INFO (ParserWrapper:67) Start loading ontology: http://purl.obolibrary.org/obo/go.owl from: http://purl.obolibrary.org/obo/go.owl 2016-06-17 15:34:45,204 INFO (ParserWrapper:74) Finished loading ontology: http://purl.obolibrary.org/obo/go.owl from: http://purl.obolibrary.org/obo/go.owl 2016-06-17 15:34:45,898 INFO (Reasoner:117) ELK reasoner was created 2016-06-17 15:34:56,273 INFO (LoggingStageExecutor:70) Loading of Axioms started 2016-06-17 15:34:56,290 INFO (AbstractReasonerStage:161) Loading of Axioms using 2 workers 2016-06-17 15:35:02,558 WARN (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored: InverseObjectProperties(http://purl.obolibrary.org/obo/BFO_0000050 http://purl.obolibrary.org/obo/BFO_0000051) 2016-06-17 15:35:07,722 INFO (LoggingStageExecutor:103) Loading of Axioms took 11435 ms 2016-06-17 15:35:07,723 INFO (LoggingStageExecutor:70) Property Saturation Initialization started 2016-06-17 15:35:07,725 INFO (AbstractReasonerStage:161) Property Saturation Initialization using 2 workers 2016-06-17 15:35:07,726 INFO (LoggingStageExecutor:103) Property Saturation Initialization took 1 ms 2016-06-17 15:35:07,727 INFO (LoggingStageExecutor:70) Reflexive Property Computation started 2016-06-17 15:35:07,732 INFO (AbstractReasonerStage:161) Reflexive Property Computation using 2 workers 2016-06-17 15:35:07,734 INFO (LoggingStageExecutor:103) Reflexive Property Computation took 6 ms 2016-06-17 15:35:07,735 INFO (LoggingStageExecutor:70) Object Property Hierarchy and Composition Computation started 2016-06-17 15:35:07,738 INFO (AbstractReasonerStage:161) Object Property Hierarchy and Composition Computation using 2 workers 2016-06-17 15:35:07,746 INFO (LoggingStageExecutor:103) Object Property Hierarchy and Composition Computation took 10 ms 2016-06-17 15:35:07,750 INFO (LoggingStageExecutor:70) Context Initialization started 2016-06-17 15:35:07,751 INFO (AbstractReasonerStage:161) Context Initialization using 2 workers 2016-06-17 15:35:07,754 INFO (LoggingStageExecutor:103) Context Initialization took 3 ms 2016-06-17 15:35:07,754 INFO (LoggingStageExecutor:70) Consistency Checking started 2016-06-17 15:35:07,760 INFO (AbstractReasonerStage:161) Consistency Checking using 2 workers 2016-06-17 15:35:07,886 INFO (LoggingStageExecutor:103) Consistency Checking took 131 ms 2016-06-17 15:35:07,888 INFO (LoggingStageExecutor:70) Class Taxonomy Computation started 2016-06-17 15:35:07,898 INFO (AbstractReasonerStage:161) Class Taxonomy Computation using 2 workers 2016-06-17 15:35:36,867 INFO (LoggingStageExecutor:103) Class Taxonomy Computation took 28977 ms 2016-06-17 15:37:46,134 INFO (IDmap:113) Identical Seq ID (UniProtKB:D4A021) for 2 different genes: RGD:2320907 RGD:1305765 2016-06-17 15:37:46,135 INFO (IDmap:113) Identical Seq ID (UniProtKB:P01966) for 2 different genes: ENSEMBL:ENSBTAG00000026417 ENSEMBL:ENSBTAG00000026418 2016-06-17 15:37:46,135 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 2 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 2016-06-17 15:37:46,135 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 3 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 UniProtKB:P07405 2016-06-17 15:37:46,135 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 4 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 UniProtKB:P07405 UniProtKB:P60529 2016-06-17 15:37:46,136 INFO (IDmap:113) Identical Seq ID (UniProtKB:P69905) for 2 different genes: HGNC:4824 HGNC:4823 2016-06-17 15:37:46,136 INFO (IDmap:113) Identical Seq ID (UniProtKB:P69907) for 2 different genes: Gene:HBA1 Gene:HBA2 2016-06-17 15:37:46,136 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 5 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 UniProtKB:P07405 UniProtKB:P60529 UniProtKB:Q8HY34 2016-06-17 15:37:46,148 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 6 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 UniProtKB:P07405 UniProtKB:P60529 UniProtKB:Q8HY34 UniProtKB:P01979 2016-06-17 15:37:46,149 INFO (IDmap:151) Identical Gene ID (Gene:MB) for 2 different sequence IDs: UniProtKB:P02189 UniProtKB:P63113 2016-06-17 15:37:46,150 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q7ZT21) for 2 different genes: ZFIN:ZDB-GENE-980526-80 ZFIN:ZDB-GENE-061207-39 2016-06-17 15:37:46,150 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q90486) for 2 different genes: Gene:ENSDARG00000097238 ENSEMBL:ENSDARG00000089087 2016-06-17 15:37:46,150 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q90485) for 2 different genes: si:dz118j2.1 si:dz118j2.3 2016-06-17 15:37:46,150 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q90485) for 3 different genes: si:dz118j2.1 si:dz118j2.3 zgc:92900 2016-06-17 15:37:46,152 INFO (IDmap:113) Identical Seq ID (UniProtKB:O93548) for 2 different genes: ZFIN:ZDB-GENE-090501-3 ZFIN:ZDB-GENE-131120-128 2016-06-17 15:37:46,153 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 2 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 2016-06-17 15:37:46,153 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 3 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 UniProtKB:P07412 2016-06-17 15:37:46,154 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 4 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 UniProtKB:P07412 UniProtKB:P60524 2016-06-17 15:37:46,154 INFO (IDmap:113) Identical Seq ID (UniProtKB:P11517) for 2 different genes: ENSEMBL:ENSRNOG00000048955 ENSEMBL:ENSRNOG00000031230 2016-06-17 15:37:46,157 INFO (IDmap:113) Identical Seq ID (UniProtKB:A8DUK4) for 2 different genes: MGI:MGI:5474852 MGI:MGI:5474850 2016-06-17 15:37:46,157 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 5 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 UniProtKB:P07412 UniProtKB:P60524 UniProtKB:P02026 2016-06-17 15:37:46,167 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 6 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 UniProtKB:P07412 UniProtKB:P60524 UniProtKB:P02026 UniProtKB:P02111 2016-06-17 15:37:46,168 INFO (IDmap:151) Identical Gene ID (Gene:HBZ1) for 2 different sequence IDs: UniProtKB:P13787 UniProtKB:P06347 2016-06-17 15:37:46,169 INFO (IDmap:113) Identical Seq ID (UniProtKB:P02007) for 2 different genes: ENSEMBL:ENSGALG00000023740 ENSEMBL:ENSGALG00000007458 2016-06-17 15:37:46,180 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 15:37:46,181 INFO (DisplayTree:70) There are 412 nodes in the PTHR11442 tree
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pgaudet
selewis
krchristie
Hello,
It happens rather frequently that PAINT annotation matrices do not load at all, or load partially. An example is PTHR11442, that I tried loading today (2016/06/17) several times. Until 9 AM CA time, nothing was loading. After 9 AM; the matrix only loaded annotation from Drosophila glob1 (Q9VF15). However, I know there is other data, for example for a mouse protein (P04247), which is not loaded.
I think it's a problem with the GO database being unaccessible by PAINT. Here's what the terminal window is spitting out: (it doesn't seem to realize it's not loading anything, but I can't claim too really understand this !)
Thanks, Pascale
ANNOTATION MATRIX NOT LOADED M-200278:paint2.0-beta pascalegaudet$ sh launchpaint.sh 2016-06-17 13:34:20,468 INFO (PaintYaml:45) Trying config found at: config/preferences.yaml 2016-06-17 13:34:20,798 INFO (PaintYaml:50) Using config found at: config/preferences.yaml 2016-06-17 13:34:21,712 INFO (PaintStartupTask:203) Loading Paint version 2.0-beta19 2016-06-17 13:34:37,618 INFO (class:571) View #4, Garbage0, is a garbage view--destroying 2016-06-17 13:34:47,255 INFO (LoginUtil:404) Logging in to Panther URL: http://paintcuration.usc.edu 2016-06-17 13:34:59,819 INFO (ParserWrapper:67) Start loading ontology: http://purl.obolibrary.org/obo/go.owl from: http://purl.obolibrary.org/obo/go.owl 2016-06-17 13:42:46,761 INFO (ParserWrapper:74) Finished loading ontology: http://purl.obolibrary.org/obo/go.owl from: http://purl.obolibrary.org/obo/go.owl 2016-06-17 13:42:47,370 INFO (Reasoner:117) ELK reasoner was created 2016-06-17 13:42:54,838 INFO (LoggingStageExecutor:70) Loading of Axioms started 2016-06-17 13:42:54,934 INFO (AbstractReasonerStage:161) Loading of Axioms using 2 workers 2016-06-17 13:43:03,373 WARN (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored: InverseObjectProperties(http://purl.obolibrary.org/obo/BFO_0000050 http://purl.obolibrary.org/obo/BFO_0000051) 2016-06-17 13:43:05,625 INFO (LoggingStageExecutor:103) Loading of Axioms took 10695 ms 2016-06-17 13:43:05,626 INFO (LoggingStageExecutor:70) Property Saturation Initialization started 2016-06-17 13:43:05,627 INFO (AbstractReasonerStage:161) Property Saturation Initialization using 2 workers 2016-06-17 13:43:05,628 INFO (LoggingStageExecutor:103) Property Saturation Initialization took 2 ms 2016-06-17 13:43:05,629 INFO (LoggingStageExecutor:70) Reflexive Property Computation started 2016-06-17 13:43:05,635 INFO (AbstractReasonerStage:161) Reflexive Property Computation using 2 workers 2016-06-17 13:43:05,660 INFO (LoggingStageExecutor:103) Reflexive Property Computation took 31 ms 2016-06-17 13:43:05,661 INFO (LoggingStageExecutor:70) Object Property Hierarchy and Composition Computation started 2016-06-17 13:43:05,680 INFO (AbstractReasonerStage:161) Object Property Hierarchy and Composition Computation using 2 workers 2016-06-17 13:43:05,689 INFO (LoggingStageExecutor:103) Object Property Hierarchy and Composition Computation took 27 ms 2016-06-17 13:43:05,689 INFO (LoggingStageExecutor:70) Context Initialization started 2016-06-17 13:43:05,690 INFO (AbstractReasonerStage:161) Context Initialization using 2 workers 2016-06-17 13:43:05,692 INFO (LoggingStageExecutor:103) Context Initialization took 3 ms 2016-06-17 13:43:05,693 INFO (LoggingStageExecutor:70) Consistency Checking started 2016-06-17 13:43:05,706 INFO (AbstractReasonerStage:161) Consistency Checking using 2 workers 2016-06-17 13:43:05,844 INFO (LoggingStageExecutor:103) Consistency Checking took 150 ms 2016-06-17 13:43:05,844 INFO (LoggingStageExecutor:70) Class Taxonomy Computation started 2016-06-17 13:43:05,856 INFO (AbstractReasonerStage:161) Class Taxonomy Computation using 2 workers 2016-06-17 13:43:30,634 INFO (LoggingStageExecutor:103) Class Taxonomy Computation took 24789 ms 2016-06-17 13:45:30,146 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q5AEL3) for 2 different genes: Gene:CaO19.255 Gene:CaO19.7887 2016-06-17 13:45:30,174 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,174 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,175 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,175 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,176 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,176 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 13:45:30,180 INFO (DisplayTree:70) There are 383 nodes in the PTHR31944 tree 2016-06-17 15:04:39,328 INFO (GUIManager:305) Exiting.
ANNOTATION MATRIX PARTIALLY LOADED M-200278:paint2.0-beta pascalegaudet$ sh launchpaint.sh 2016-06-17 15:26:40,772 INFO (PaintYaml:45) Trying config found at: config/preferences.yaml 2016-06-17 15:26:40,843 INFO (PaintYaml:50) Using config found at: config/preferences.yaml 2016-06-17 15:26:40,999 INFO (PaintStartupTask:203) Loading Paint version 2.0-beta19 2016-06-17 15:26:45,647 INFO (class:571) View #4, Garbage0, is a garbage view--destroying 2016-06-17 15:26:50,350 INFO (LoginUtil:404) Logging in to Panther URL: http://paintcuration.usc.edu 2016-06-17 15:27:00,725 INFO (ParserWrapper:67) Start loading ontology: http://purl.obolibrary.org/obo/go.owl from: http://purl.obolibrary.org/obo/go.owl 2016-06-17 15:34:45,204 INFO (ParserWrapper:74) Finished loading ontology: http://purl.obolibrary.org/obo/go.owl from: http://purl.obolibrary.org/obo/go.owl 2016-06-17 15:34:45,898 INFO (Reasoner:117) ELK reasoner was created 2016-06-17 15:34:56,273 INFO (LoggingStageExecutor:70) Loading of Axioms started 2016-06-17 15:34:56,290 INFO (AbstractReasonerStage:161) Loading of Axioms using 2 workers 2016-06-17 15:35:02,558 WARN (ChangeIndexingProcessor:66) ELK does not support InverseObjectProperties. Axiom ignored: InverseObjectProperties(http://purl.obolibrary.org/obo/BFO_0000050 http://purl.obolibrary.org/obo/BFO_0000051) 2016-06-17 15:35:07,722 INFO (LoggingStageExecutor:103) Loading of Axioms took 11435 ms 2016-06-17 15:35:07,723 INFO (LoggingStageExecutor:70) Property Saturation Initialization started 2016-06-17 15:35:07,725 INFO (AbstractReasonerStage:161) Property Saturation Initialization using 2 workers 2016-06-17 15:35:07,726 INFO (LoggingStageExecutor:103) Property Saturation Initialization took 1 ms 2016-06-17 15:35:07,727 INFO (LoggingStageExecutor:70) Reflexive Property Computation started 2016-06-17 15:35:07,732 INFO (AbstractReasonerStage:161) Reflexive Property Computation using 2 workers 2016-06-17 15:35:07,734 INFO (LoggingStageExecutor:103) Reflexive Property Computation took 6 ms 2016-06-17 15:35:07,735 INFO (LoggingStageExecutor:70) Object Property Hierarchy and Composition Computation started 2016-06-17 15:35:07,738 INFO (AbstractReasonerStage:161) Object Property Hierarchy and Composition Computation using 2 workers 2016-06-17 15:35:07,746 INFO (LoggingStageExecutor:103) Object Property Hierarchy and Composition Computation took 10 ms 2016-06-17 15:35:07,750 INFO (LoggingStageExecutor:70) Context Initialization started 2016-06-17 15:35:07,751 INFO (AbstractReasonerStage:161) Context Initialization using 2 workers 2016-06-17 15:35:07,754 INFO (LoggingStageExecutor:103) Context Initialization took 3 ms 2016-06-17 15:35:07,754 INFO (LoggingStageExecutor:70) Consistency Checking started 2016-06-17 15:35:07,760 INFO (AbstractReasonerStage:161) Consistency Checking using 2 workers 2016-06-17 15:35:07,886 INFO (LoggingStageExecutor:103) Consistency Checking took 131 ms 2016-06-17 15:35:07,888 INFO (LoggingStageExecutor:70) Class Taxonomy Computation started 2016-06-17 15:35:07,898 INFO (AbstractReasonerStage:161) Class Taxonomy Computation using 2 workers 2016-06-17 15:35:36,867 INFO (LoggingStageExecutor:103) Class Taxonomy Computation took 28977 ms 2016-06-17 15:37:46,134 INFO (IDmap:113) Identical Seq ID (UniProtKB:D4A021) for 2 different genes: RGD:2320907 RGD:1305765 2016-06-17 15:37:46,135 INFO (IDmap:113) Identical Seq ID (UniProtKB:P01966) for 2 different genes: ENSEMBL:ENSBTAG00000026417 ENSEMBL:ENSBTAG00000026418 2016-06-17 15:37:46,135 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 2 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 2016-06-17 15:37:46,135 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 3 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 UniProtKB:P07405 2016-06-17 15:37:46,135 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 4 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 UniProtKB:P07405 UniProtKB:P60529 2016-06-17 15:37:46,136 INFO (IDmap:113) Identical Seq ID (UniProtKB:P69905) for 2 different genes: HGNC:4824 HGNC:4823 2016-06-17 15:37:46,136 INFO (IDmap:113) Identical Seq ID (UniProtKB:P69907) for 2 different genes: Gene:HBA1 Gene:HBA2 2016-06-17 15:37:46,136 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 5 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 UniProtKB:P07405 UniProtKB:P60529 UniProtKB:Q8HY34 2016-06-17 15:37:46,148 INFO (IDmap:151) Identical Gene ID (Gene:HBA) for 6 different sequence IDs: UniProtKB:P01965 UniProtKB:P01958 UniProtKB:P07405 UniProtKB:P60529 UniProtKB:Q8HY34 UniProtKB:P01979 2016-06-17 15:37:46,149 INFO (IDmap:151) Identical Gene ID (Gene:MB) for 2 different sequence IDs: UniProtKB:P02189 UniProtKB:P63113 2016-06-17 15:37:46,150 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q7ZT21) for 2 different genes: ZFIN:ZDB-GENE-980526-80 ZFIN:ZDB-GENE-061207-39 2016-06-17 15:37:46,150 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q90486) for 2 different genes: Gene:ENSDARG00000097238 ENSEMBL:ENSDARG00000089087 2016-06-17 15:37:46,150 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q90485) for 2 different genes: si:dz118j2.1 si:dz118j2.3 2016-06-17 15:37:46,150 INFO (IDmap:113) Identical Seq ID (UniProtKB:Q90485) for 3 different genes: si:dz118j2.1 si:dz118j2.3 zgc:92900 2016-06-17 15:37:46,152 INFO (IDmap:113) Identical Seq ID (UniProtKB:O93548) for 2 different genes: ZFIN:ZDB-GENE-090501-3 ZFIN:ZDB-GENE-131120-128 2016-06-17 15:37:46,153 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 2 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 2016-06-17 15:37:46,153 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 3 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 UniProtKB:P07412 2016-06-17 15:37:46,154 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 4 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 UniProtKB:P07412 UniProtKB:P60524 2016-06-17 15:37:46,154 INFO (IDmap:113) Identical Seq ID (UniProtKB:P11517) for 2 different genes: ENSEMBL:ENSRNOG00000048955 ENSEMBL:ENSRNOG00000031230 2016-06-17 15:37:46,157 INFO (IDmap:113) Identical Seq ID (UniProtKB:A8DUK4) for 2 different genes: MGI:MGI:5474852 MGI:MGI:5474850 2016-06-17 15:37:46,157 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 5 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 UniProtKB:P07412 UniProtKB:P60524 UniProtKB:P02026 2016-06-17 15:37:46,167 INFO (IDmap:151) Identical Gene ID (Gene:HBB) for 6 different sequence IDs: UniProtKB:P02067 UniProtKB:P02062 UniProtKB:P07412 UniProtKB:P60524 UniProtKB:P02026 UniProtKB:P02111 2016-06-17 15:37:46,168 INFO (IDmap:151) Identical Gene ID (Gene:HBZ1) for 2 different sequence IDs: UniProtKB:P13787 UniProtKB:P06347 2016-06-17 15:37:46,169 INFO (IDmap:113) Identical Seq ID (UniProtKB:P02007) for 2 different genes: ENSEMBL:ENSGALG00000023740 ENSEMBL:ENSGALG00000007458 2016-06-17 15:37:46,180 INFO (DisplayTree:211) null and null are equally distant from parent 2016-06-17 15:37:46,181 INFO (DisplayTree:70) There are 412 nodes in the PTHR11442 tree