search

geneontology / paint

This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
Other
4 stars 4 forks source link

PAINT annotations to ‘apoptotic process’ in plants #26

Closed paolaroncaglia closed 8 years ago

paolaroncaglia commented 8 years ago

Hello,

I just noticed some PAINT annotations to ‘apoptotic process’ for plant species (Viridiplantae). These are 165 IBAs, all with qualifier = NOT. May I please double-check this - I kind of remember that there was some issue in applying taxon constraints via PAINT but can’t recall if this was fixed. Apoptosis as such doesn’t occur in plants, and yes all those annotations say that some gene products are NOT involved in apoptosis in plants, but I’m assuming that the intent was to say that they are NOT involved in programmed cell death instead.

Thanks, Paola

selewis commented 8 years ago

This will require someone to re-annotate the relevant families, which we cannot do unless we know the family ID (i.e. the PTHRnnnnn). To even begin to do this we need the Uniprot IDs for these proteins, but most direct is the PTHRnnnnn. IDs please of some sort.

pgaudet commented 8 years ago

I'm happy to be assigned this issue.