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geneontology / paint

This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
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Need a linkable URL formation for PTNs to PANTHERDB.org #51

Closed selewis closed 6 years ago

selewis commented 6 years ago

Now that the with column is being included in the GO ribbon the PTN ancestral nodes are displayed. (See http://xenademo.berkeleybop.io:2992/gene/SGD:S000002976 and click on homeostasis for an example). As near as I can determine there is currently no means of using a PTN id to open the appropriate tree on the PANTHER site. We'd really like to link to PANTHER, but right now a link is impossible (including a silly Google search).

Help?

huaiyumi commented 6 years ago

The PTN ids can be linked to the pantree website, e.g., http://pantree.org/node/annotationNode.jsp?id=PTN000684825. However, it is true that it is not easy to trace the experimental evidence used to annotate the ancestor node.