One of the main uses of the GO is to perform enrichment analysis on gene sets. For example, given a set of genes that are up-regulated under certain conditions, an enrichment analysis will find which GO terms are over-represented (or under-represented) using annotations for that gene set.
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panther says some entries "unclassified" what does this mean? #14
Unclassified by what criteria? These have GO annotations
and I am using GO BP default