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geneontology / pathways2GO

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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Set up projects to track progress and tasks for Reactome2GO #167

Closed ukemi closed 2 years ago

ukemi commented 2 years ago

It is time to move from the old notes in the Google Drive to a more formal structure. We will set up projects for each of the main objectives in the Reactome2GO conversion and add tasks to those projects. The ultimate goal is to achieve a list of specific tasks that can be enumerated and scoped the way the Lori did for the MGI imports.

ukemi commented 2 years ago

There are currently two project in the pathways2GO repository. Should we try to roll them into the top-level project? copy them to the top level?

deustp01 commented 2 years ago

How are they related to the straw man framework?

ukemi commented 2 years ago

They could be rolled in, but the way they were set up is also a good organization on their own. We could leave two projects, and just add the tickets to the new projects. We would need to remember to move them along in the boards for both projects. If this doesn't make sense we can look at it together.

deustp01 commented 2 years ago

A quick sanity check on the whole structure on Monday will probably be a good idea.

ukemi commented 2 years ago

I'll add it to the call agenda.

ukemi commented 2 years ago

Progress so far. I have created top level GOC projects for each of the projects we discussed in the straw-man proposal. I have added tickets to those projects. I have gone to the Pathways2GO repo and assigned each ticket to a project. I have also added general labels to the tickets to give an overall view of who's court the ticket is in. On Monday, let's look at the columns in each project and refine them with respect to proposed workflow. Then I think we can close out this ticket.