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Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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Vitamin C (ascorbate) metabolism (R-HSA-196836)
#211
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ukemi
opened
1 year ago
ukemi
commented
1 year ago
[ ] Let's look at this pathway together on a weeds call. It looks like there are several spontaneous reactions. Can we devise a strategy for handling those even though they will never get an enabler?
[x] Turns out mice can synthesize ascorbate. I have created two mouse pathways:
http://noctua.geneontology.org/editor/graph/gomodel:6348a65d00002622
and
http://noctua.geneontology.org/editor/graph/gomodel:6348a65d00002993
that vary by one enzyme. I'm not quite sure where to start them as the literature seems to mention two starting points. May be something to discuss on a weeds call.