Ben has some code and an SOP for generating these numbers and lists of reactions missing certain components (function, location, causal relation, enabler). These lists are then plugged into a web tool at https://bioinformatics.psb.ugent.be/webtools/Venn/ to generate the diagram image.
Requested in https://github.com/geneontology/pathways2GO/issues/176#issue-1262286564. Generate stats for fraction of GO-CAMs that is complete and the reasons for incompleteness (like the Venn diagram Figure 4 in the Good et al. paper)
Ben has some code and an SOP for generating these numbers and lists of reactions missing certain components (function, location, causal relation, enabler). These lists are then plugged into a web tool at https://bioinformatics.psb.ugent.be/webtools/Venn/ to generate the diagram image.