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geneontology / pathways2GO

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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Something is weird about the import of Regulation of glycolysis by fructose 2,6-bisphosphate metabolism - imported from: Reactome #223

Open ukemi opened 1 year ago

ukemi commented 1 year ago

We need to have a look at this pathway and figure out why the reactions are not grouped under the pathway and why the pathway sits alone.

vanaukenk commented 1 year ago

@ukemi Did you see that @deustp01 made a similar observation about the model affected by the replaced by updates for this week's outage? https://github.com/geneontology/go-ontology/issues/24546#issuecomment-1353144829

ukemi commented 1 year ago

Interesting. This seems to be a new bug. @dustine32 any ideas? It looks like all of the 'connections' to the pathway/BP are pointing to separate instances.

ukemi commented 1 year ago

Oddly enough, this only seems to be happening on some models. My favorite glycolysis still looks correct.

dustine32 commented 1 year ago

@ukemi I can take a look at this pathway R-HSA-9634600