geneontology / pathways2GO

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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Extract ChEBI ID for all small molecules #224

Closed dustine32 closed 1 year ago

dustine32 commented 1 year ago

For #221.

Now we will attempt to extract CHEBI terms for all SmallMolecules regardless of whether it's in a Reactome or YeastCyc pathway.

Also removed a redundant variable reactome_entity_id as it's effectively the same as entity_idand not used anywhere else.