geneontology / pathways2GO

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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Infer has_small_molecule_regulator for #204 #235

Closed dustine32 closed 1 year ago

dustine32 commented 1 year ago

For #204. Replaces logic that created binding activities and regulates edges for each small molecule that had an inferred "involved in {+ | -} regulation of" relation. This now simply connects the small mol to the reaction via a "has small molecule {activator | inhibitor}" edge.

This only applies to CHEBI chemicals but not nucleic acids.