geneontology / pathways2GO

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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Analysis of missing ChEBI identifiers #239

Open ukemi opened 1 year ago

ukemi commented 1 year ago

In the process of converting Reacto chemical identifiers to CHEBI identifiers, we noticed that a number of CHEBI identifiers were not resolving in the graph editor. A list of the non-converting identifiers can be found in this spreadsheet: https://docs.google.com/spreadsheets/d/1iLvhPsRbfXxt7uZyMSenUUnzd2FUBR14Z57ziEiglNc/edit#gid=0 We need to analyze those identifers, determine why they didn't resolve in the GO-CAM models and create a method to get them to load. This is the first step in replacing the Reacto entity ontology with entities from ontologies that are shared by the community.