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geneontology / pathways2GO

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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Merge manually-curated YeastPathways2BP into conversion code #255

Closed suzialeksander closed 9 months ago

suzialeksander commented 1 year ago

On the latest load of YeastPathways, I still see biological_process even though we have a more accurate BP to map to. I've uploaded the YeastPathways2BP file in the shared drive, not sure if it's already in the GDrive somewhere else but I couldn't find it.
Screenshot 2023-05-12 at 17 19 00 On the 2023-01-23 Alliance Pathways call it was decided to just hack this mapping into the code as a quick fix.

Mapping decisions discussed in https://github.com/geneontology/pathways2GO/issues/159 and originating ticket. This ticket will be completed when the fix is in place and the BPs are mapped to the correct pathways.

Originally posted by @suzialeksander in https://github.com/geneontology/go-ontology/issues/20091#issuecomment-1546427734

suzialeksander commented 9 months ago

i think this has cleared