geneontology / pathways2GO

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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There are still orphan entities in some models #274

Open ukemi opened 1 year ago

ukemi commented 1 year ago

I think we had dealt with gene products, but I also see orphan complexes in models. Here is an example: gomodel:R-HSA-5357786.

I can see where the dimer is in the pathways diagram, but I don't easily see the other two. Is this the same issue as before in which they are entities in pathways that are linked to this pathway, but don't function in it? But, R-HSA-9816109 ----- browsing Reactome it looks like it should be here R-HSA-83582 and here R-HSA-9796346