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geneontology / pathways2GO

Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
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generate ontology inference diff report with explanations #29

Open goodb opened 5 years ago

goodb commented 5 years ago

Input: 1 ontologies (e.g. GOPlus and GOPlus with the addition of axioms for MFs generated from RHEA) Output: table showing new inferences resulting from addition of new axioms along with explanations

goodb commented 5 years ago

This is driven by needs here: https://github.com/geneontology/go-ontology/issues/14984
It could potentially be approached by series of Robot command line calls. (Existing code buried alongside code for making axioms from rhea https://github.com/geneontology/pathways2GO/blob/master/exchange/src/main/java/org/geneontology/gocam/exchange/rhea/MFCreator.java )

balhoff commented 5 years ago

Starting point: https://github.com/balhoff/ammonite-scripts/blob/master/explain_ontology_inference_diff.sc

goodb commented 4 years ago

If this issue is kept, it ought to be moved into Minerva. Otherwise close out here.